SearchTerm: Function to search keywords for similar GO terms.

In FSim: A package to search functionally similar genes

Description

Providing a group of functional keywords, the function return a group of related GO IDs based on GO terms and their synonym terms.

Usage

SearchTerm(fun, fuzzy = FALSE, method = "union")

Arguments

fun	Charactors of a group of function keywords.
fuzzy	if TRUE, search for approximate matches of functional keywords. if FALSE, only search for matched keywords.
method	The method to combine GO terms from different keywords. If it is "union", the function return all matched terms. if it is "intersect", only overlapped functions are returned.

Value

A data.frame object including matched GOID, Ontology and Term.

Author(s)

Qiang Hu

See Also

SearchGene

Examples

SearchTerm("chromatin remodel")

FSim documentation built on May 2, 2019, 6:30 p.m.