Man pages for HTDA
HTDA (High Throughput Data Analysis)
| annotate | Function for Gene-Set Enrichment Analysis |
| AverageScan | function to extract average mass/charge and intensity value... |
| DenovoAsmAnnoT | Function for denovo Transcriptomics Assembly |
| diffExp | Function for Differential Expression |
| diffExpR | Function for RNASeq Differential Expression |
| extract | Helper function for parse-shimadzu |
| FinalTable | Helper function for parse-shimadzu |
| gcProcess | Function for GCMS data preprocessing |
| HTDA-package | HTDA-High Throghput Data Analysis |
| IndiMsScan | Function to extract m/z and intensity from each scan of Mass... |
| MultiVariAnalysis | Function for Multivariant Analysis |
| NcmsProcessData-class | Class '"NcmsProcessData"' |
| Parse | Another helper function for parse-Shimadzu |
| parse.shimadzu | Function for parsing Shimadzy pre-processed .txt file |
| parse.Shimadzu-class | Class '"parse.Shimadzu"' |
| plotAllMsSpectra | function for plotting all Mass Spectrum |
| PlotChrom | Plotting gas chromatogram |
| plotMsSpectrum | plot individual mass spectrum |
| preprocess | Function for processing raw LCMS data |
| PreProcessData-class | Class '"PreProcessData"' |
| QualityDenovo | Function to check the quality of the assembled Transcriptome |
| rmBaseline | Baseline Correction |
| rnaseqProcess | Constructor for class PreProcessData |
| SeqAna | Function for the annotation of assembled Transcriptome |
| SequnecAnalysisData-class | Class '"SequnecAnalysisData"' |
| show-methods | ~~ Methods for Function 'show' ~~ |
