HaploSurvival: Modelling of haplo-effects for survival data, including competing risks. Effect of haplomatch for BMT studies.

Programs for estimating haplotype effects for survival and competing risks data. Special functions to deal with effect of patient and donor haplotypes for genotype matched data.

Author
Thomas Scheike with contributions from Jeremy Silver
Date of publication
2013-04-17 11:51:09
Maintainer
Thomas Scheike <ts@biostat.ku.dk>
License
GPL (version 2 or later)
Version
1.0-4

View on R-Forge

Man pages

design
Specifies design of Cox-Aalen survival or competing risks...
genosetup
Infers possible haplotypes based on genotype data.
haplo.cif
Competings Risks Regression for haplotype effects
haplofreq
Fit Hardy-Weinberg equilibrium model for haplotype...
haplo.match
Fit Cox-Aalen survival model for haplo-match effects for BMT...
haplomatch.cif
Competings Risks Regression for effect of haplo-match for BMT...
haplo.surv
Fit Cox-Aalen survival model for haplotype effects
internal-hp
For internal use
summary.haplofreq
Prints summary statistics for haplo frequency fit

Files in this package

HaploSurvival/DESCRIPTION
HaploSurvival/NAMESPACE
HaploSurvival/R
HaploSurvival/R/First.r
HaploSurvival/R/genoSetup.r
HaploSurvival/R/haplo-cif.r
HaploSurvival/R/haplo-match-cif.r
HaploSurvival/R/haplo-match.r
HaploSurvival/R/haplo-surv.r
HaploSurvival/R/sim.donor.r
HaploSurvival/data
HaploSurvival/data/pafah.txt.gz
HaploSurvival/demo
HaploSurvival/demo/00Index
HaploSurvival/demo/pafah.r
HaploSurvival/gnugpl2.txt
HaploSurvival/man
HaploSurvival/man/design.Rd
HaploSurvival/man/genosetup.Rd
HaploSurvival/man/haplo.cif.Rd
HaploSurvival/man/haplo.match.Rd
HaploSurvival/man/haplo.surv.Rd
HaploSurvival/man/haplofreq.Rd
HaploSurvival/man/haplomatch.cif.Rd
HaploSurvival/man/internal-hp.Rd
HaploSurvival/man/summary.haplofreq.Rd
HaploSurvival/src
HaploSurvival/src/Makevars
HaploSurvival/src/comptest-cmprsk.c
HaploSurvival/src/genoLogLike.c
HaploSurvival/src/genoMLE-des.c
HaploSurvival/src/haplo-cif.c
HaploSurvival/src/haplo-match-cif.c
HaploSurvival/src/haplo-match-des.c
HaploSurvival/src/haplo-surv-des.c
HaploSurvival/src/haplosurv.h
HaploSurvival/src/matrix.c
HaploSurvival/src/matrix.h
HaploSurvival/src/simple-haplo-match-des.c
HaploSurvival/src/simple-haplo-surv-des.c