HaploSurvival: Modelling of haplo-effects for survival data, including competing risks. Effect of haplomatch for BMT studies.
Version 1.0-4

Programs for estimating haplotype effects for survival and competing risks data. Special functions to deal with effect of patient and donor haplotypes for genotype matched data.

Browse man pages Browse package API and functions Browse package files

AuthorThomas Scheike with contributions from Jeremy Silver
Date of publication2013-04-17 11:51:09
MaintainerThomas Scheike <ts@biostat.ku.dk>
LicenseGPL (version 2 or later)
Version1.0-4
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("HaploSurvival", repos="http://R-Forge.R-project.org")

Man pages

design: Specifies design of Cox-Aalen survival or competing risks...
genosetup: Infers possible haplotypes based on genotype data.
haplo.cif: Competings Risks Regression for haplotype effects
haplofreq: Fit Hardy-Weinberg equilibrium model for haplotype...
haplo.match: Fit Cox-Aalen survival model for haplo-match effects for BMT...
haplomatch.cif: Competings Risks Regression for effect of haplo-match for BMT...
haplo.surv: Fit Cox-Aalen survival model for haplotype effects
internal-hp: For internal use
summary.haplofreq: Prints summary statistics for haplo frequency fit

Functions

First.lib Source code
ast.lib Source code
design Man page
designX Man page
designZ Man page
geno.setup Man page Source code
haplo.cif Man page Source code
haplo.freqs Man page Source code
haplo.match Man page Source code
haplo.surv Man page Source code
haplomatch.cif Man page Source code
pafah Man page
print.geno.setup Man page Source code
print.haplo.freqs Man page Source code
sim.donor Man page Source code
summary.geno.setup Man page Source code
summary.haplo.freqs Man page Source code

Files

DESCRIPTION
NAMESPACE
R
R/First.r
R/genoSetup.r
R/haplo-cif.r
R/haplo-match-cif.r
R/haplo-match.r
R/haplo-surv.r
R/sim.donor.r
data
data/pafah.txt.gz
demo
demo/00Index
demo/pafah.r
gnugpl2.txt
man
man/design.Rd
man/genosetup.Rd
man/haplo.cif.Rd
man/haplo.match.Rd
man/haplo.surv.Rd
man/haplofreq.Rd
man/haplomatch.cif.Rd
man/internal-hp.Rd
man/summary.haplofreq.Rd
src
src/Makevars
src/comptest-cmprsk.c
src/genoLogLike.c
src/genoMLE-des.c
src/haplo-cif.c
src/haplo-match-cif.c
src/haplo-match-des.c
src/haplo-surv-des.c
src/haplosurv.h
src/matrix.c
src/matrix.h
src/simple-haplo-match-des.c
src/simple-haplo-surv-des.c
HaploSurvival documentation built on May 21, 2017, 2:23 a.m.