summary.haplofreq: Prints summary statistics for haplo frequency fit

In HaploSurvival: Modelling of haplo-effects for survival data, including competing risks. Effect of haplomatch for BMT studies.

Description

Presents MLE of haplotype frequencies based on Hardy-Weinberg equilibrium.

Usage

## S3 method for class 'haplo.freqs'
summary(object,...)

Arguments

object	an haplo.freq object.
...	unused arguments - for S3 compatibility

Author(s)

Jeremy Silver

Examples

### Simulating data
n<-200;
haplo.types<-rbind(c(0,0),c(1,0),c(0,1),c(1,1))
pairs<-matrix(sample(1:4,n*2,replace=TRUE),n,2) ### randomly selects haplotypes

g<-matrix(haplo.types[pairs,],n,4) ### observed genotype, haplotype-pair 1 = g[c(1,3),]

gs<-geno.setup(g);

hapfit<-haplo.freqs(g,geno.setup=gs)
summary(hapfit); 

X<-matrix(1,3,1);
hapfit<-haplo.freqs(g,geno.setup=gs,haplo.design=X)
summary(hapfit); 

HaploSurvival documentation built on May 2, 2019, 5:49 p.m.