LabelPlot: Coloring specific leaves of a dendrogram

In IntClust: Integrated Data Analysis via Clustering

Description

Just as the function ClusterCols, LabelCols as its own plotting function LabelPlot which plots the dendrogram.

Usage

LabelPlot(Data, Sel1, Sel2 = NULL, col1, col2 = NULL, ...)

Arguments

Data	The result of a method which contains the dendrogram to be colored.
Sel1	The selection of objects to be colored.
Sel2	An optional second selection to be colored.
col1	The color for the first selection.
col2	The color for the optional second selection.
...	Other options which can be given to the plot function.

Value

A plot of the dendrogram of which the leaves of the selection(s) are colored.

Author(s)

Marijke Van Moerbeke

Examples

data(fingerprintMat)
MCF7_F = Cluster(fingerprintMat,type="data",distmeasure="tanimoto",normalize=FALSE,
method=NULL,clust="agnes",linkage="ward",gap=FALSE,maxK=55,StopRange=FALSE)

ClustF_6=cutree(MCF7_F$Clust,6)

SelF=rownames(fingerprintMat)[ClustF_6==6]
SelF

LabelPlot(MCF7_F,Sel1=SelF,Sel2=NULL,col1='darkorchid')

IntClust documentation built on May 2, 2019, 5:23 p.m.