FindCluster: Find a selection of compounds in the output of...

In IntClust: Integrated Data Analysis via Clustering

Description

FindCluster selects the compounds belonging to a cluster after the results of the methods have been rearranged by the ReorderToReference.

Usage

FindCluster(List, nrclusters=NULL, select = c(1, 1), fusionsLog = TRUE, 
WeightClust = TRUE, names = NULL)

Arguments

List	A list of the clustering outputs to be compared. The first element of the list will be used as the reference in ReorderToReference.
nrclusters	The number of clusters to cut the dendrogram in.
select	The row (the method) and the number of the cluster to select.
fusionsLog	To be handed to ReorderToReference.
WeightClust	To be handed to ReorderToReference.
names	Optional. Names of the methods.

Value

A character vector containing the names of the compounds in the selected cluster.

Author(s)

Marijke Van Moerbeke

Examples

data(fingerprintMat)
data(targetMat)

MCF7_F = Cluster(fingerprintMat,type="data",distmeasure="tanimoto",normalize=FALSE,
method=NULL,clust="agnes",linkage="ward",gap=FALSE,maxK=55,StopRange=FALSE)
MCF7_T = Cluster(targetMat,type="data",distmeasure="tanimoto",normalize=FALSE,
method=NULL,clust="agnes",linkage="ward",gap=FALSE,maxK=55,StopRange=FALSE)

L=list(MCF7_F,MCF7_T)
names=c("FP","TP")

Comps=FindCluster(L,nrclusters=7,select=c(1,4))
Comps

IntClust documentation built on May 2, 2019, 5:23 p.m.