SpectrumQuery-class: Class to contain individual spectrum query identification...

In RpepXML: R interface to the pepXML standard

Description

Class implementing the spectrum_query element of the pepXML standard.

Slots

searchResults:

Object of class "list" (generally of length 1), containing the search results, see "SearchResult".

spectrumId:

Object of class "character", id of the spectrum.

startScan:

Object of class "integer" providing the start scan.

endScan:

Object of class "integer" providing the end scan.

precNeutralMass:

Object of class "numeric" giving the precursor's neutral mass.

assumedCharge:

Object of class "numeric" documenting the precursor's assumed charge.

queryIndex:

Object of class "integer" specifying the query unique index.

.__classVersion__:

Object of class "Versions", documenting the version of the class.

Extends

Class Versioned, directly.

Methods

assumedCharge<-

signature(object = "SpectrumQuery", value = "numeric"): ...

assumedCharge

signature(object = "SpectrumQuery"): ...

endScan<-

signature(object = "SpectrumQuery", value = "integer"): ...

endScan

signature(object = "SpectrumQuery"): ...

filterHits

signature(object = "SpectrumQuery"): ...

nProteins

signature(object = "SpectrumQuery"): ...

nSearchHits

signature(object = "SpectrumQuery"): ...

nSearchResults

signature(object = "SpectrumQuery"): ...

precNeutralMass<-

signature(object = "SpectrumQuery", value = "numeric"): ...

precNeutralMass

signature(object = "SpectrumQuery"): ...

proteins

signature(object = "SpectrumQuery"): ...

queryIndex<-

signature(object = "SpectrumQuery", value = "integer"): ...

queryIndex

signature(object = "SpectrumQuery"): ...

searchResults<-

signature(object = "SpectrumQuery", value = "list"): ...

searchResults

signature(object = "SpectrumQuery"): ...

show

signature(object = "SpectrumQuery"): ...

spectrumId<-

signature(object = "SpectrumQuery", value = "character"): ...

spectrumId

signature(object = "SpectrumQuery"): ...

startScan<-

signature(object = "SpectrumQuery", value = "integer"): ...

startScan

signature(object = "SpectrumQuery"): ...

Author(s)

Laurent Gatto

See Also

"MSMSpepXML", "SearchResult", "SearchHit"

Examples

showClass("SpectrumQuery")

RpepXML documentation built on May 2, 2019, 5:15 p.m.