proteinSummary: Return a table of identified proteins.
In RpepXML: R interface to the pepXML standard
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
View source: R/MSMSpepXML-class.R
Description
This function works with instances of
"MSMSpepXML",
"SpectrumQuery",
"SearchResult" or
"SearchHit" classes and returns a table summary
of the proteins inferred from the peptide hits. All proteins,
irrespective of peptide scores of hit rank are return.
Usage
1
proteinSummary(object)
Arguments
object
object of class "MSMSpepXML",
"SpectrumQuery",
"SearchResult" or
"SearchHit".
Value
A table.
Author(s)
Laurent Gatto
See Also
See Also proteins-methods.
Examples
1
2
3
pepxml <- system.file("extdata","tinySearch.pepXML",package="RpepXML")
x <- parseMSMSpepXML(pepxml)
proteinSummary(x)
RpepXML documentation built on May 2, 2019, 5:15 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
View source: R/MSMSpepXML-class.R
Description
This function works with instances of
"MSMSpepXML",
"SpectrumQuery",
"SearchResult" or
"SearchHit" classes and returns a table summary
of the proteins inferred from the peptide hits. All proteins,
irrespective of peptide scores of hit rank are return.
Usage
1 | proteinSummary(object)
|
Arguments
object |
object of class |
Value
A table.
Author(s)
Laurent Gatto
See Also
See Also proteins-methods.
Examples
1 2 3 | pepxml <- system.file("extdata","tinySearch.pepXML",package="RpepXML")
x <- parseMSMSpepXML(pepxml)
proteinSummary(x)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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