proteinSummary: Return a table of identified proteins.

Description Usage Arguments Value Author(s) See Also Examples

View source: R/MSMSpepXML-class.R

Description

This function works with instances of "MSMSpepXML", "SpectrumQuery", "SearchResult" or "SearchHit" classes and returns a table summary of the proteins inferred from the peptide hits. All proteins, irrespective of peptide scores of hit rank are return.

Usage

1

Arguments

object

object of class "MSMSpepXML", "SpectrumQuery", "SearchResult" or "SearchHit".

Value

A table.

Author(s)

Laurent Gatto

See Also

See Also proteins-methods.

Examples

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 pepxml <- system.file("extdata","tinySearch.pepXML",package="RpepXML")
 x <- parseMSMSpepXML(pepxml)
 proteinSummary(x)

RpepXML documentation built on May 2, 2019, 5:15 p.m.