parseMSMSpepXML: Read a pepXML file into R

In RpepXML: R interface to the pepXML standard

Description

This function reads a pepXML given as parameter and parses it, producing an object of class "MSMSpepXML".

Usage

parseMSMSpepXML(pepfile, verbose = TRUE)

Arguments

pepfile	the name of the pepXML file which the data are to be read from.
verbose	a logical value indicating if a progress bar should be displayed.

Value

an object of class "MSMSpepXML".

Note

The pepXML file should not contain any XML comments as these are not (yet) handled properly and will be considered as nodes in the XML tree.

Author(s)

Laurent Gatto

Examples

 pepxml <- system.file("extdata","tinySearch.pepXML",package="RpepXML")
 x <- parseMSMSpepXML(pepxml)
 show(x)

RpepXML documentation built on May 2, 2019, 5:15 p.m.