STAR: Spike Train Analysis with R
Version 0.1-5

Functions to analyze neuronal spike trains

AuthorChristophe Pouzat
Date of publicationNone
MaintainerChristophe Pouzat <christophe.pouzat@gmail.com>
LicenseGPL version 2 or newer
Version0.1-5
URL http://www.biomedicale.univ-paris5.fr/physcerv/C_Pouzat/STAR.html
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("STAR", repos="http://R-Forge.R-project.org")

Getting started

Package overview

Popular man pages

acf.spikeTrain: Auto- Covariance and -Correlation Function Estimation for...
dinvgauss: The Inverse Gaussian Distribution
invgaussMLE: Maximum Likelihood Parameter Estimation of an Inverse...
isiHistFit: ISI Histogram With Fitted Model and CI
llogisMLE: Maximum Likelihood Parameter Estimation of a Log Logistic...
psth: Compute and Plot Peri-Stimulus Time Histogram
raster: Generate a Raster Plot
See all...

All man pages Function index File listing

Man pages

acf.spikeTrain: Auto- Covariance and -Correlation Function Estimation for...
as.repeatedTrain: Coerce and Test repeatedTrain Objects
as.spikeTrain: Coerce, Test and Extract from spikeTrain Objects
brt4df: Get Backward Recurrence Times from Data Frames Generated by...
cockroachALData: Spike Trains of several Cockroach Antennal Lobe Neurons...
coef.durationFit: Utility Functions for durationFit Objects
compModels: Compare Duration Models on a Specific Data Set
df4counts: Generates a Data Frame from a repeatedTrain Object After Time...
diff.spikeTrain: diff method for spikeTrain objects
dinvgauss: The Inverse Gaussian Distribution
dllogis: The Log Logistic Distribution
drexp: The Refractory Exponential Distribution
frt: Computes Forward Recurrence Times from Two transformedTrain...
gammaMLE: Maximum Likelihood Parameter Estimation of a Gamma Model with...
gamObj: Generic Function and Methods for Extracting a gamObject
hgamma: Hazard Functions for Some Common Duration Distributions
hist.lockedTrain: Auto- and Cross-Intensity Function Estimate for Spike Trains
invgaussMLE: Maximum Likelihood Parameter Estimation of an Inverse...
isiHistFit: ISI Histogram With Fitted Model and CI
jpsth: Related Functions and Methods for Joint-PSTHs and Joint...
llogisMLE: Maximum Likelihood Parameter Estimation of a Log Logistic...
lnormMLE: Maximum Likelihood Parameter Estimation of a Log Normal Model...
lockedTrain: Construct and Plot Time-Dependent Cross-correlation Diagram
mkDummy: Generates a Data Frame of Dummy Variables for Use in gam
mkGLMdf: Formats (lists of) spikeTrain and repeatedTrain Objects into...
mkREdf: Evaluates RateEvolutions for spikeTrain Lists and Returns...
plot.frt: Plots and Summarizes frt Objects.
plot.spikeTrain: Display Counting Process Associated with Single Spike Train
plot.transformedTrain: Plot Diagnostics for an transformedTrain Object
print.repeatedTrain: Print and Summary Methods for repeatedTrain Objects
print.spikeTrain: Print and Summary Methods for spikeTrain Objects
psth: Compute and Plot Peri-Stimulus Time Histogram
purkinjeCellData: Spike Trains of a Purkinje Cells (PC) Recorded in Control...
qqDuration: Quantile-Quantile Plot For Fitted Duration Distributions
raster: Generate a Raster Plot
rateEvolution: Evaluates and Plots a Spike Train Firing Rate's Evolution
renewalTestPlot: Non-Parametric Tests for Renewal Processes
reportHTML: Generic Function for Automatic HTML Report Generation
reportHTML.gam: Generates a Report in HTML Format from a STAR gam Object
reportHTML.repeatedTrain: Performs Basic Spike Train Analysis and Generates a Report in...
reportHTML.spikeTrain: Performs Basic Spike Train Analysis and Generates a Report in...
rexpMLE: Maximum Likelihood Parameter Estimation of a Refractory...
ShallowShocks: Shallow Shocks (M >= 6.0) in OFF Tohoku Area for 1885-1980
slockedTrain: Function to Smooth a lockedTrain Object and Related Methods
spsth: Smooth Peri Stimulus Time Histogram Related Functions and...
STAR-package: Spike Train Analysis with R
summary.transformedTrain: Summary of transformedTrain Objects
trainWAV: Generate wav Files from Spike Train(s)
transformedTrain: Performs Time Transformation of Spike Trains Fitted with glm...
varianceTime: Variance-Time Analysis for Spike Trains
weibullMLE: Maximum Likelihood Parameter Estimation of a Weibull Model...

Functions

CAL1S Man page
CAL1V Man page
CAL2C Man page
CAL2S Man page
STAR Man page
STAR-package Man page
ShallowShocks Man page
[.spikeTrain Man page
\%frt\% Man page
acf.spikeTrain Man page Source code
as.repeatedTrain Man page Source code
as.spikeTrain Man page Source code
brt4df Man page Source code
coef.durationFit Man page Source code
compModels Man page Source code
contour.jpsth Man page Source code
df4counts Man page Source code
diff.spikeTrain Man page Source code
dinvgauss Man page Source code
dllogis Man page Source code
drexp Man page Source code
e070528citronellal Man page
e070528spont Man page
frt Man page Source code
gamObj Man page Source code
gamObj.slockedTrain Man page Source code Source code
gamObj.spsth Man page Source code
gammaMLE Man page Source code
hgamma Man page Source code
hinvgauss Man page Source code
hist.lockedTrain Man page Source code
hllogis Man page Source code
hlnorm Man page Source code
hrexp Man page Source code
hweibull Man page Source code
image.jpsth Man page Source code
invgaussMLE Man page Source code
is.durationFit Man page Source code
is.repeatedTrain Man page Source code
is.spikeTrain Man page Source code
is.varianceTime Man page Source code
isiHistFit Man page Source code
jpsth Man page Source code
jpsth2df Man page Source code
jsd Man page Source code
llogisMLE Man page Source code
lnormMLE Man page Source code
lockedTrain Man page Source code
logLik.durationFit Man page Source code
mPK Man page
mkDummy Man page Source code
mkGLMdf Man page Source code
mkREdf Man page Source code
persp.jpsth Man page Source code
pinvgauss Man page Source code
pllogis Man page Source code
plot.frt Man page Source code
plot.hist.lockedTrain Man page Source code
plot.lockedTrain Man page Source code
plot.psth Man page Source code
plot.rateEvolution Man page Source code
plot.repeatedTrain Man page Source code
plot.slockedTrain Man page Source code
plot.spikeTrain Man page Source code
plot.spsth Man page Source code
plot.transformedTrain Man page Source code
plot.varianceTime Man page Source code
prexp Man page Source code
print.lockedTrain Man page Source code
print.repeatedTrain Man page Source code
print.slockedTrain Man page Source code
print.spikeTrain Man page Source code
print.spsth Man page Source code
print.summary.repeatedTrain Man page Source code
psth Man page Source code
qinvgauss Man page Source code
qllogis Man page Source code
qqDuration Man page Source code
qrexp Man page Source code
raster Man page Source code
rateEvolution Man page Source code
renewalTestPlot Man page Source code
reportHTML Man page Source code
reportHTML.gam Man page Source code
reportHTML.repeatedTrain Man page Source code
reportHTML.spikeTrain Man page Source code
rexpMLE Man page Source code
rinvgauss Man page Source code
rllogis Man page Source code
rrexp Man page Source code
sPK Man page
slockedTrain Man page Source code
spsth Man page Source code
summary.frt Man page Source code
summary.repeatedTrain Man page Source code
summary.slockedTrain Man page Source code
summary.spikeTrain Man page Source code
summary.spsth Man page Source code
summary.transformedTrain Man page Source code
trainWAV Man page Source code
transformedTrain Man page Source code
varianceTime Man page Source code
weibullMLE Man page Source code

Files

data
data/CAL2S.rda
data/CAL1S.rda
data/ShallowShocks.rda
data/CAL2C.rda
data/sPK.rda
data/e070528spont.rda
data/mPK.rda
data/e070528citronellal.rda
data/CAL1V.rda
R
R/repeatedTrain.R
R/reportHTML.repeatedTrain.R
R/spikeTrain.R
R/summary.transformedTrain.R
R/reportHTML.gam.R
R/slockedTrain.R
R/spikeTrainStats.R
R/reportHTML.spikeTrain.R
R/frt.R
R/spsth.R
R/transformedTrain.R
R/reportHTML.R
R/plot.transformedTrain.R
R/brt4df.R
R/trainWAV.R
R/rateEvolution.R
R/durationDist.R
R/lockedTrain.R
R/jpsth.R
R/mkGLMdf.R
R/gamObj.R
R/mkDummy.R
NAMESPACE
inst
inst/doc
inst/doc/PouzatChaffiol_STARdraft.Rnw
inst/doc/PouzatChaffiol_STARdraft.pdf
DESCRIPTION
ChangeLog
man
man/isiHistFit.Rd
man/qqDuration.Rd
man/rateEvolution.Rd
man/as.spikeTrain.Rd
man/raster.Rd
man/reportHTML.Rd
man/lockedTrain.Rd
man/gammaMLE.Rd
man/hist.lockedTrain.Rd
man/brt4df.Rd
man/cockroachALData.Rd
man/frt.Rd
man/mkGLMdf.Rd
man/renewalTestPlot.Rd
man/plot.frt.Rd
man/llogisMLE.Rd
man/varianceTime.Rd
man/purkinjeCellData.Rd
man/lnormMLE.Rd
man/STAR-package.Rd
man/mkDummy.Rd
man/compModels.Rd
man/as.repeatedTrain.Rd
man/weibullMLE.Rd
man/rexpMLE.Rd
man/psth.Rd
man/summary.transformedTrain.Rd
man/slockedTrain.Rd
man/trainWAV.Rd
man/reportHTML.repeatedTrain.Rd
man/spsth.Rd
man/drexp.Rd
man/print.repeatedTrain.Rd
man/plot.spikeTrain.Rd
man/coef.durationFit.Rd
man/df4counts.Rd
man/acf.spikeTrain.Rd
man/print.spikeTrain.Rd
man/mkREdf.Rd
man/diff.spikeTrain.Rd
man/dllogis.Rd
man/plot.transformedTrain.Rd
man/reportHTML.spikeTrain.Rd
man/dinvgauss.Rd
man/jpsth.Rd
man/gamObj.Rd
man/reportHTML.gam.Rd
man/transformedTrain.Rd
man/hgamma.Rd
man/invgaussMLE.Rd
man/ShallowShocks.Rd
demo
demo/Ogata1988.R
demo/00Index
demo/HMM.R
demo/cockroachDataSet1.R
demo/cockroachDataSet2.R
demo/pkDataSet1.R
STAR documentation built on May 21, 2017, 12:46 a.m.

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