STAR: Spike Train Analysis with R

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Functions to analyze neuronal spike trains

Author
Christophe Pouzat
Date of publication
None
Maintainer
Christophe Pouzat <christophe.pouzat@gmail.com>
License
GPL version 2 or newer
Version
0.1-5
URLs

View on R-Forge

Man pages

acf.spikeTrain
Auto- Covariance and -Correlation Function Estimation for...
as.repeatedTrain
Coerce and Test repeatedTrain Objects
as.spikeTrain
Coerce, Test and Extract from spikeTrain Objects
brt4df
Get Backward Recurrence Times from Data Frames Generated by...
cockroachALData
Spike Trains of several Cockroach Antennal Lobe Neurons...
coef.durationFit
Utility Functions for durationFit Objects
compModels
Compare Duration Models on a Specific Data Set
df4counts
Generates a Data Frame from a repeatedTrain Object After Time...
diff.spikeTrain
diff method for spikeTrain objects
dinvgauss
The Inverse Gaussian Distribution
dllogis
The Log Logistic Distribution
drexp
The Refractory Exponential Distribution
frt
Computes Forward Recurrence Times from Two transformedTrain...
gammaMLE
Maximum Likelihood Parameter Estimation of a Gamma Model with...
gamObj
Generic Function and Methods for Extracting a gamObject
hgamma
Hazard Functions for Some Common Duration Distributions
hist.lockedTrain
Auto- and Cross-Intensity Function Estimate for Spike Trains
invgaussMLE
Maximum Likelihood Parameter Estimation of an Inverse...
isiHistFit
ISI Histogram With Fitted Model and CI
jpsth
Related Functions and Methods for Joint-PSTHs and Joint...
llogisMLE
Maximum Likelihood Parameter Estimation of a Log Logistic...
lnormMLE
Maximum Likelihood Parameter Estimation of a Log Normal Model...
lockedTrain
Construct and Plot Time-Dependent Cross-correlation Diagram
mkDummy
Generates a Data Frame of Dummy Variables for Use in gam
mkGLMdf
Formats (lists of) spikeTrain and repeatedTrain Objects into...
mkREdf
Evaluates RateEvolutions for spikeTrain Lists and Returns...
plot.frt
Plots and Summarizes frt Objects.
plot.spikeTrain
Display Counting Process Associated with Single Spike Train
plot.transformedTrain
Plot Diagnostics for an transformedTrain Object
print.repeatedTrain
Print and Summary Methods for repeatedTrain Objects
print.spikeTrain
Print and Summary Methods for spikeTrain Objects
psth
Compute and Plot Peri-Stimulus Time Histogram
purkinjeCellData
Spike Trains of a Purkinje Cells (PC) Recorded in Control...
qqDuration
Quantile-Quantile Plot For Fitted Duration Distributions
raster
Generate a Raster Plot
rateEvolution
Evaluates and Plots a Spike Train Firing Rate's Evolution
renewalTestPlot
Non-Parametric Tests for Renewal Processes
reportHTML
Generic Function for Automatic HTML Report Generation
reportHTML.gam
Generates a Report in HTML Format from a STAR gam Object
reportHTML.repeatedTrain
Performs Basic Spike Train Analysis and Generates a Report in...
reportHTML.spikeTrain
Performs Basic Spike Train Analysis and Generates a Report in...
rexpMLE
Maximum Likelihood Parameter Estimation of a Refractory...
ShallowShocks
Shallow Shocks (M >= 6.0) in OFF Tohoku Area for 1885-1980
slockedTrain
Function to Smooth a lockedTrain Object and Related Methods
spsth
Smooth Peri Stimulus Time Histogram Related Functions and...
STAR-package
Spike Train Analysis with R
summary.transformedTrain
Summary of transformedTrain Objects
trainWAV
Generate wav Files from Spike Train(s)
transformedTrain
Performs Time Transformation of Spike Trains Fitted with glm...
varianceTime
Variance-Time Analysis for Spike Trains
weibullMLE
Maximum Likelihood Parameter Estimation of a Weibull Model...

Files in this package

STAR
STAR/data
STAR/data/CAL2S.rda
STAR/data/CAL1S.rda
STAR/data/ShallowShocks.rda
STAR/data/CAL2C.rda
STAR/data/sPK.rda
STAR/data/e070528spont.rda
STAR/data/mPK.rda
STAR/data/e070528citronellal.rda
STAR/data/CAL1V.rda
STAR/R
STAR/R/repeatedTrain.R
STAR/R/reportHTML.repeatedTrain.R
STAR/R/spikeTrain.R
STAR/R/summary.transformedTrain.R
STAR/R/reportHTML.gam.R
STAR/R/slockedTrain.R
STAR/R/spikeTrainStats.R
STAR/R/reportHTML.spikeTrain.R
STAR/R/frt.R
STAR/R/spsth.R
STAR/R/transformedTrain.R
STAR/R/reportHTML.R
STAR/R/plot.transformedTrain.R
STAR/R/brt4df.R
STAR/R/trainWAV.R
STAR/R/rateEvolution.R
STAR/R/durationDist.R
STAR/R/lockedTrain.R
STAR/R/jpsth.R
STAR/R/mkGLMdf.R
STAR/R/gamObj.R
STAR/R/mkDummy.R
STAR/NAMESPACE
STAR/inst
STAR/inst/doc
STAR/inst/doc/PouzatChaffiol_STARdraft.Rnw
STAR/inst/doc/PouzatChaffiol_STARdraft.pdf
STAR/DESCRIPTION
STAR/ChangeLog
STAR/man
STAR/man/isiHistFit.Rd
STAR/man/qqDuration.Rd
STAR/man/rateEvolution.Rd
STAR/man/as.spikeTrain.Rd
STAR/man/raster.Rd
STAR/man/reportHTML.Rd
STAR/man/lockedTrain.Rd
STAR/man/gammaMLE.Rd
STAR/man/hist.lockedTrain.Rd
STAR/man/brt4df.Rd
STAR/man/cockroachALData.Rd
STAR/man/frt.Rd
STAR/man/mkGLMdf.Rd
STAR/man/renewalTestPlot.Rd
STAR/man/plot.frt.Rd
STAR/man/llogisMLE.Rd
STAR/man/varianceTime.Rd
STAR/man/purkinjeCellData.Rd
STAR/man/lnormMLE.Rd
STAR/man/STAR-package.Rd
STAR/man/mkDummy.Rd
STAR/man/compModels.Rd
STAR/man/as.repeatedTrain.Rd
STAR/man/weibullMLE.Rd
STAR/man/rexpMLE.Rd
STAR/man/psth.Rd
STAR/man/summary.transformedTrain.Rd
STAR/man/slockedTrain.Rd
STAR/man/trainWAV.Rd
STAR/man/reportHTML.repeatedTrain.Rd
STAR/man/spsth.Rd
STAR/man/drexp.Rd
STAR/man/print.repeatedTrain.Rd
STAR/man/plot.spikeTrain.Rd
STAR/man/coef.durationFit.Rd
STAR/man/df4counts.Rd
STAR/man/acf.spikeTrain.Rd
STAR/man/print.spikeTrain.Rd
STAR/man/mkREdf.Rd
STAR/man/diff.spikeTrain.Rd
STAR/man/dllogis.Rd
STAR/man/plot.transformedTrain.Rd
STAR/man/reportHTML.spikeTrain.Rd
STAR/man/dinvgauss.Rd
STAR/man/jpsth.Rd
STAR/man/gamObj.Rd
STAR/man/reportHTML.gam.Rd
STAR/man/transformedTrain.Rd
STAR/man/hgamma.Rd
STAR/man/invgaussMLE.Rd
STAR/man/ShallowShocks.Rd
STAR/demo
STAR/demo/Ogata1988.R
STAR/demo/00Index
STAR/demo/HMM.R
STAR/demo/cockroachDataSet1.R
STAR/demo/cockroachDataSet2.R
STAR/demo/pkDataSet1.R