seqtreedisplay: Graphical rendering of a sequence regression tree

In TraMineR: Trajectory Miner: a Sequence Analysis Toolkit

Graphical rendering of a sequence regression tree

Description

Generate a graphical representation of a regression tree of state sequence data.

Usage

seqtreedisplay(tree, filename = NULL, seqdata = tree$info$object,
  only.leaf = FALSE, sortv = NULL, diss = NULL, cex.main = 3,
  with.legend = "auto", cex.legend = cex.main, xaxis = FALSE,
  image.format = "png", with.quality = TRUE, cex.quality = cex.main,
  legend.text = NULL, show.tree = TRUE, show.depth = FALSE,
  imgLeafOnly, dist.matrix, title.cex, withlegend, legend.fontsize,
  imageformat, withquality, quality.fontsize, legendtext, showtree,
  showdepth, axes, ...)

disstreedisplay(tree, filename = NULL, image.data= NULL, image.fun = plot,
  only.leaf = FALSE, cex.main = 3, image.format = "png",
  with.quality = TRUE, cex.quality = cex.main,
  legend.text = NULL, show.tree = TRUE, show.depth = FALSE,
  imagedata, imagefunc, imgLeafOnly, title.cex, imageformat,
  withquality, quality.fontsize, legendtext, showtree, showdepth, ...)

Arguments

tree	A seqtree object (as produced by seqtree) for seqtreedisplay. A disstree object (as produced by disstree) for disstreedisplay.
filename	The name of a file where to save the plot (overwritting existing file). If NULL, a temporary file is created.
seqdata	The sequence object containing the state sequences plotted in the nodes.
only.leaf	Logical. If TRUE sequences are plotted only in terminal nodes.
sortv	Argument passed to seqplot
diss	Argument passed to seqplot
cex.main	Node title magnification. See par.
with.legend	Logical. Should the color legend be displayed on the plot?
cex.legend	Legend magnification. See par. If not specified, use the value of cex.main.
xaxis	Logical. Should the x-axis be displayed on the plots? (argument passed to seqplot)
image.format	Image format of the output file (filename)
with.quality	If TRUE, a node displaying fitting measures of the tree is added to the plot.
cex.quality	Fitting measure text magnification. See par. If not specified, use the value of cex.main.
legend.text	Character. Optional text information that should be added.
show.tree	Logical. Should the tree be shown on the screen?
show.depth	Logical. If TRUE, the splits are ordered according to their global pseudo-R2.
image.fun	A function to plot the individuals in a node, see details.
image.data	a data.frame that will be passed to image.fun.
imgLeafOnly	Deprecated. Use only.leaf instead.
dist.matrix	Deprecated. Use diss instead.
title.cex	Deprecated. Use cex.main instead.
withlegend	Deprecated. Use with.legend instead.
legend.fontsize	Deprecated. Use cex.legend instead.
imageformat	Deprecated. Use image.format instead.
withquality	Deprecated. Use with.quality instead.
quality.fontsize	Deprecated. Use cex.quality instead.
legendtext	Deprecated. Use legend.text instead.
showtree	Deprecated. Use show.tree instead.
showdepth	Deprecated. Use show.depth instead.
imagedata	Deprecated. Use image.data instead.
imagefunc	Deprecated. Use image.fun instead.
axes	Deprecated. Use xaxis instead.
...	additional arguments passed to seqplot

Details

This function generates a tree image. For each node, it invokes seqplot for the selected lines of seqdata as argument. You should at least specify the type of the plot to use (type="d" for instance, see seqplot for more details).

The plot is actually not generated as an R plot, but with GraphViz (www.graphviz.org). Hence, seqtreedisplay only works when GraphViz is correctly installed. If the path to GraphViz is not found, pass the path as a gvpath argument among the ... list.

Conversion to image formats other than "jpeg" or "png" is done using ImageMagick (www.imagemagick.org). To use this feature, ImageMagick (www.imagemagick.org) should hence also be installed.

Value

None

Author(s)

Matthias Studer (with Gilbert Ritschard for the help page)

See Also

See seqtree and disstree for examples, and disstree2dot for generating "dot" files.

TraMineR documentation built on Dec. 8, 2024, 3:01 p.m.