VPA: Variant Pattern Analyzer for next-generation sequencing study

VPA (Variant Pattern Analyzer) is a package for prioritizing variants with specified frequency pattern from multiple study subjects in next-generation sequencing study. To install VPA package in Unix-like operation system, the version of R should be >= 2.12.1. To install VPA package in Windows operation system, the version of R should be >=2.14.0.

AuthorQiang Hu
Date of publication2013-08-30 20:22:11
MaintainerQiang Hu <huqmail@gmail.com>
LicenseGPL-2
Version0.3.6

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Files in this package

VPA/DESCRIPTION
VPA/NAMESPACE
VPA/R
VPA/R/LoadFiltering.R VPA/R/Patterning.R VPA/R/ann.R VPA/R/filterpos.R VPA/R/filtervcf.R VPA/R/gefreq.R VPA/R/pos2seq.R VPA/R/readvcf.R VPA/R/vcfreq.R VPA/R/writevcf.R
VPA/inst
VPA/inst/NEWS
VPA/inst/README
VPA/inst/doc
VPA/inst/doc/VPA.pdf
VPA/inst/extdata
VPA/inst/extdata/1151HZ0001.flt.vcf
VPA/inst/extdata/1151HZ0001.vcf.gz
VPA/inst/extdata/1151HZ0001.vcf.gz.tbi
VPA/inst/extdata/1151HZ0002.flt.vcf
VPA/inst/extdata/1151HZ0002.vcf.gz
VPA/inst/extdata/1151HZ0002.vcf.gz.tbi
VPA/inst/extdata/1151HZ0004.flt.vcf
VPA/inst/extdata/1151HZ0004.vcf.gz
VPA/inst/extdata/1151HZ0004.vcf.gz.tbi
VPA/inst/extdata/1151HZ0005.flt.vcf
VPA/inst/extdata/1151HZ0005.vcf.gz
VPA/inst/extdata/1151HZ0005.vcf.gz.tbi
VPA/inst/extdata/1151HZ0006.flt.vcf
VPA/inst/extdata/1151HZ0006.vcf.gz
VPA/inst/extdata/1151HZ0006.vcf.gz.tbi
VPA/inst/extdata/1151HZ0007.flt.vcf
VPA/inst/extdata/1151HZ0007.vcf.gz
VPA/inst/extdata/1151HZ0007.vcf.gz.tbi
VPA/inst/extdata/1KG.vcf.gz
VPA/inst/extdata/1KG.vcf.gz.tbi
VPA/inst/extdata/dbSNP.bed.gz
VPA/inst/extdata/dbSNP.bed.gz.tbi
VPA/inst/extdata/index1.txt
VPA/inst/extdata/index2.txt
VPA/inst/extdata/index3.txt
VPA/man
VPA/man/LoadFiltering.Rd VPA/man/Patterning.Rd VPA/man/Pos2Gene.Rd VPA/man/VPA-package.Rd VPA/man/filterpos.Rd VPA/man/filtervcf.Rd VPA/man/gefreq.Rd VPA/man/getref.Rd VPA/man/pos2seq.Rd VPA/man/read.vcf.Rd VPA/man/subvcf.Rd VPA/man/vcfreq.Rd VPA/man/write.vcf.Rd

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