getref: Download reference gene annotation
In VPA: Variant Pattern Analyzer for next-generation sequencing study
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
To download reference gene table from UCSC genome browser golden path.
Usage
1
getref(ref="hg19")
Arguments
ref
The version of reference genome, such as hg18, hg19, etc.
Details
List of reference gene table can be found at:
http://hgdownload.cse.ucsc.edu/goldenPath/.
Value
A data.frame from flat table of reference gene annotation.
Author(s)
Qiang Hu
See Also
Examples
1
#gereq(varRes1)
VPA documentation built on May 2, 2019, 4:45 p.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
Description
To download reference gene table from UCSC genome browser golden path.
Usage
1 | getref(ref="hg19")
|
Arguments
ref |
The version of reference genome, such as hg18, hg19, etc. |
Details
List of reference gene table can be found at: http://hgdownload.cse.ucsc.edu/goldenPath/.
Value
A data.frame from flat table of reference gene annotation.
Author(s)
Qiang Hu
See Also
Examples
1 | #gereq(varRes1)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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