Description Usage Arguments Value Author(s) See Also Examples
Load VCF format file of variant and/or sequence calls into a flexible VCF object in R environment.
1 |
file |
VCF format file of sequence calls from tools such as samtools and GATK. |
VCF |
An object list from the function |
INFOID |
Characters. Only specified elements in INFO column of VCF file will be read. |
FORMATID |
Characters. Only specified elements in FORMAT column of VCF file will be read. |
... |
not used. |
A vcf object. Also it is a list. Each element of the list is from a column of the VCF file. See HEAD for details.
Qiang Hu
1 2 3 4 5 | ##read example vcf file in data directory.
vcffile <- system.file("extdata", "1151HZ0001.flt.vcf", package="VPA")
vcfdata <- read.vcf(vcffile)
summary(vcfdata)
write.vcf(vcfdata)
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