|filterpos||Filter variants against known SNP dataset|
|filtervcf||Filter variants with user-specified quality criteria|
|gefreq||Frequency analysis at gene level|
|getref||Download reference gene annotation|
|LoadFiltering||To load and filter variants in batch mode|
|Patterning||Extract variants with user-specified variant pattern|
|Pos2Gene||Map sequencing variants to gene|
|pos2seq||Positions to sequencing calls|
|read.vcf||Read VCF file|
|subvcf||Subset of VCF data|
|vcfreq||Variant frequency of a varlist|
|VPA-package||Extract variants from VCF data with specified variant...|
|write.vcf||Write VCF object|
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