Man pages for VPA
Variant Pattern Analyzer for next-generation sequencing study

filterposFilter variants against known SNP dataset
filtervcfFilter variants with user-specified quality criteria
gefreqFrequency analysis at gene level
getrefDownload reference gene annotation
LoadFilteringTo load and filter variants in batch mode
PatterningExtract variants with user-specified variant pattern
Pos2GeneMap sequencing variants to gene
pos2seqPositions to sequencing calls
read.vcfRead VCF file
subvcfSubset of VCF data
vcfreqVariant frequency of a varlist
VPA-packageExtract variants from VCF data with specified variant...
write.vcfWrite VCF object
VPA documentation built on May 31, 2017, 1:56 a.m.