VPA
Variant Pattern Analyzer for next-generation sequencing study

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VPA: Variant Pattern Analyzer for next-generation sequencing study
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Man pages for VPA
Variant Pattern Analyzer for next-generation sequencing study

filterposFilter variants against known SNP dataset
filtervcfFilter variants with user-specified quality criteria
gefreqFrequency analysis at gene level
getrefDownload reference gene annotation
LoadFilteringTo load and filter variants in batch mode
PatterningExtract variants with user-specified variant pattern
Pos2GeneMap sequencing variants to gene
pos2seqPositions to sequencing calls
read.vcfRead VCF file
subvcfSubset of VCF data
vcfreqVariant frequency of a varlist
VPA-packageExtract variants from VCF data with specified variant...
write.vcfWrite VCF object
VPA documentation built on May 2, 2019, 4:45 p.m.

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