kcponds: Ponds in a nature reserve

In ade4: Analysis of Ecological Data : Exploratory and Euclidean Methods in Environmental Sciences

Description

This data set contains informations about 33 ponds in De Maten reserve (Genk, Belgium).

Usage

data(kcponds)

Format

tab

: a data frame with 15 environmental variables(columns) on 33 ponds(rows)

area

: an object of class area

xy

: a data frame with the coordinates of ponds

neig

: an object of class neig

Details

Variables of kcponds$tab are the following ones : depth, area, O2 (oxygen concentration), cond (conductivity), pH, Fe (Fe concentration), secchi (Secchi disk depth), N (NNO concentration), TP (total phosphorus concentration), chla (chlorophyll-a concentration), EM (emergent macrophyte cover), FM (floating macrophyte cover), SM (submerged macrophyte cover), denMI (total density of macroinvertebrates), divMI (diversity macroinvertebrates)

Source

Cottenie, K. (2002) Local and regional processes in a zooplankton metacommunity. PhD, Katholieke Universiteit Leuven, Leuven, Belgium.
http://www.kuleuven.ac.be/bio/eco/phdkarlcottenie.pdf

Examples

data(kcponds)
w <- as.numeric(scalewt(kcponds$tab$N))

if(adegraphicsLoaded()) {
  if(requireNamespace("sp", quiet = TRUE)) {
    g1 <- s.label(kcponds$xy, Sp = kcponds$Spatial, pSp.col = "white", nb = kcponds$nb, 
      plab.cex = 0, paxes.asp = "fill", plot = F)
    g2 <- s.label(kcponds$xy, Sp = kcponds$Spatial, pSp.col = "white", plabels.cex = 0.8, 
      paxes.asp = "fill", plot = F)
    g3 <- s.value(kcponds$xy, w, psub.text = "Nitrogen concentration", paxe.asp = "fill", plot = F)
    G <- rbindADEg(g1, g2, g3, plot = T)
  }

} else {
  par(mfrow=c(3, 1))
  area.plot(kcponds$area)
  s.label(kcponds$xy, add.p = TRUE, cpoi = 2, clab = 0)
  s.label(kcponds$xy, add.p = TRUE, cpoi = 3, clab = 0)
  s.label(kcponds$xy, add.p = TRUE, cpoi = 0, clab = 0, neig = kcponds$neig, cneig = 1)
  area.plot(kcponds$area)
  s.label(kcponds$xy, add.p = TRUE, clab = 1.5)
  s.value(kcponds$xy, w, cleg = 2, sub = "Nitrogen concentration", csub = 4, 
    possub = "topright", include = FALSE)
  par(mfrow = c(1, 1))
}

## Not run: 
  par(mfrow = c(3, 1))
  pca1 <- dudi.pca(kcponds$tab, scan = FALSE, nf = 4)
  if(requireNamespace("maptools", quiet = TRUE) & requireNamespace("spdep", quiet = TRUE)) {
    multi1 <- multispati(pca1, nb2listw(neig2nb(kcponds$neig)), scan = F, nfposi = 2, nfnega = 1)
    summary(multi1)
  }
  par(mfrow = c(1, 1))

## End(Not run)

ade4 documentation built on May 2, 2019, 5:50 p.m.