reconst: Reconstitution of Data from a Duality Diagram

In ade4: Analysis of Ecological Data : Exploratory and Euclidean Methods in Environmental Sciences

Description

Generic Function for the reconstitution of data from a principal component analysis or a correspondence analysis

Usage

reconst (dudi, ...)
## S3 method for class 'pca'
reconst(dudi, nf = 1, ...) 
## S3 method for class 'coa'
reconst(dudi, nf = 1, ...) 

Arguments

dudi	an object of class dudi used to select a method: pca or coa
nf	an integer indicating the number of kept axes for the reconstitution
...	further arguments passed to or from other methods

Value

returns a data frame containing the reconstituted data

Author(s)

Daniel Chessel
Anne B Dufour [e-mail]

References

Gabriel, K.R. (1978) Least-squares approximation of matrices by additive and multiplicative models. Journal of the Royal Statistical Society, B , 40, 186–196.

Examples

data(rhone)
dd1 <- dudi.pca(rhone$tab, nf = 2, scann = FALSE)
rh1 <- reconst(dd1, 1)
rh2 <- reconst(dd1, 2)
par(mfrow = c(4,4))
par(mar = c(2.6,2.6,1.1,1.1))
for (i in 1:15) {
    plot(rhone$date, rhone$tab[,i])
    lines(rhone$date, rh1[,i], lty = 2)
    lines(rhone$date, rh2[,i], lty = 1)
    ade4:::scatterutil.sub(names(rhone$tab)[i], 2, "topright")}

data(chats)
chatsw <- data.frame(t(chats))
chatscoa <- dudi.coa(chatsw, scann = FALSE)
model0 <- reconst(chatscoa, 0)
round(model0,3)
round(chisq.test(chatsw)$expected,3)
chisq.test(chatsw)$statistic
sum(((chatsw-model0)^2)/model0)
effectif <- sum(chatsw)
sum(chatscoa$eig)*effectif
model1 <- reconst(chatscoa, 1)
round(model1, 3)
sum(((chatsw-model1)^2)/model0)
sum(chatscoa$eig[-1])*effectif

ade4 documentation built on May 2, 2019, 5:50 p.m.