Description Usage Arguments Examples
Plots estimated densities of animal locations, which are latent variables in SECR models.
1 2 3 4 5 6 7 | locations(fit, id, infotypes = NULL, xlim = range(mask[, 1]),
ylim = range(mask[, 2]), mask = get.mask(fit), levels = NULL,
nlevels = 10, density = FALSE, cols = list(combined = "black", capt =
"purple", bearing = "green", dist = "brown", toa = "blue"), lty = 1,
show.labels = TRUE, plot.arrows = "bearing" %in% fit$infotypes,
plot.circles = "dist" %in% fit$infotypes, arrow.length = NULL,
show.legend = !add, show.axes = TRUE, add = FALSE)
|
fit |
A fitted model from admbsecr. |
id |
A numeric vector with row numbers from |
infotypes |
A character vector indicating the type(s) of
information to be used when plotting the estimated density of
location. Elements can be a subset of |
xlim |
A numeric vector of length 2, giving the x coordinate range. |
ylim |
A numeric vector of length 2, giving the y coordinate range. |
mask |
A matrix with two columns. Each row provides Cartesian
coordinates for the location of a mask point. The function
create.mask will return a suitable object. The
mask used to fit the model |
levels |
A numeric vector giving the values to be associated with the plotted contours. |
nlevels |
The number of contour levels desired. Ignored if
|
density |
Logical, if |
cols |
A list with named components corresponding to each
contour type (i.e., a subset of |
lty |
The line type of the contours; see par. |
show.labels |
Logical, if |
plot.arrows |
Logical, if |
plot.circles |
Logical, if |
arrow.length |
Numeric, providing the length of the arrows
(only used if |
show.legend |
Logical, if |
show.axes |
Logical, if |
add |
Logical, if |
1 2 3 4 5 6 7 |
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