biomod2
Ensemble Platform for Species Distribution Modeling

Package index
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Vignettes
Functions
262
Source code
44
Man pages
50
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biomod2: Ensemble Platform for Species Distribution Modeling
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API

API for biomod2
Ensemble Platform for Species Distribution Modeling

Global functions
.Models.prepare.data Man page
.Models.prepare.data,BIOMOD.formated.data-method Man page
.Models.prepare.data,BIOMOD.formated.data.PA-method Man page
.Projection.do.proj Man page
.Projection.do.proj,ANY,RasterStack-method Man page
.Projection.do.proj,ANY,data.frame-method Man page
.transform.outputs Man page
.transform.outputs,array-method Man page
.transform.outputs,list-method Man page
ANN_biomod2_model Man page
ANN_biomod2_model-class Man page
BIOMOD.EnsembleModeling.out Man page
BIOMOD.EnsembleModeling.out-class Man page
BIOMOD.Model.Options-class Man page
BIOMOD.formated.data Man page
BIOMOD.formated.data,data.frame,ANY-method Man page
BIOMOD.formated.data,numeric,RasterStack-method Man page
BIOMOD.formated.data,numeric,data.frame-method Man page
BIOMOD.formated.data,numeric,matrix-method Man page
BIOMOD.formated.data-class Man page
BIOMOD.formated.data.PA Man page
BIOMOD.formated.data.PA-class Man page
BIOMOD.models.out-class Man page
BIOMOD.projection.out Man page
BIOMOD.projection.out-class Man page
BIOMOD.stored.array Man page
BIOMOD.stored.array-class Man page
BIOMOD.stored.data Man page
BIOMOD.stored.data-class Man page
BIOMOD.stored.data.frame Man page
BIOMOD.stored.data.frame-class Man page
BIOMOD.stored.files Man page
BIOMOD.stored.files-class Man page
BIOMOD.stored.formated.data Man page
BIOMOD.stored.formated.data-class Man page
BIOMOD.stored.models.options Man page
BIOMOD.stored.models.options-class Man page
BIOMOD.stored.models.out Man page
BIOMOD.stored.models.out-class Man page
BIOMOD.stored.raster.stack Man page
BIOMOD.stored.raster.stack-class Man page
BIOMOD_ConvertOldRun Man page
BIOMOD_EnsembleForecasting Man page
BIOMOD_EnsembleModeling Man page
BIOMOD_FormatingData Man page
BIOMOD_LoadModels Man page
BIOMOD_Modeling Man page
BIOMOD_ModelingOptions Man page
BIOMOD_Projection Man page
BIOMOD_RangeSize Man page
BIOMOD_RangeSize,RasterLayer,RasterLayer-method Man page
BIOMOD_RangeSize,RasterLayer,RasterStack-method Man page
BIOMOD_RangeSize,RasterStack,RasterStack-method Man page
BIOMOD_RangeSize,array,array-method Man page
BIOMOD_RangeSize,data.frame,data.frame-method Man page
BIOMOD_RangeSize-methods Man page
BIOMOD_cv Man page
BIOMOD_presenceonly Man page
BIOMOD_tuning Man page
BinaryTransformation Man page
BinaryTransformation, Man page
BinaryTransformation,RasterBrick-method Man page
BinaryTransformation,RasterLayer-method Man page
BinaryTransformation,RasterStack-method Man page
BinaryTransformation,array-method Man page
BinaryTransformation,data.frame-method Man page
BinaryTransformation,matrix-method Man page
BinaryTransformation,numeric-method Man page
CTA_biomod2_model Man page
CTA_biomod2_model-class Man page
CustomIndexMaker Man page
DF_to_ARRAY Man page
EMca_biomod2_model Man page
EMca_biomod2_model-class Man page
EMci_biomod2_model Man page
EMci_biomod2_model-class Man page
EMcv_biomod2_model Man page
EMcv_biomod2_model-class Man page
EMmean_biomod2_model Man page
EMmean_biomod2_model-class Man page
EMmedian_biomod2_model Man page
EMmedian_biomod2_model-class Man page
EMwmean_biomod2_model Man page
EMwmean_biomod2_model-class Man page
FDA_biomod2_model Man page
FDA_biomod2_model-class Man page
FilteringTransformation Man page
FilteringTransformation,RasterBrick-method Man page
FilteringTransformation,RasterLayer-method Man page
FilteringTransformation,RasterStack-method Man page
FilteringTransformation,array-method Man page
FilteringTransformation,data.frame-method Man page
FilteringTransformation,matrix-method Man page
FilteringTransformation,numeric-method Man page
FilteringTransformation-methods Man page
Find.Optim.Stat Man page
GAM_biomod2_model Man page
GAM_biomod2_model-class Man page
GBM_biomod2_model Man page
GBM_biomod2_model-class Man page
GLM_biomod2_model Man page
GLM_biomod2_model-class Man page
LIST_to_ARRAY Man page
MARS_biomod2_model Man page
MARS_biomod2_model-class Man page
MAXENT.Phillips_biomod2_model Man page
MAXENT.Phillips_biomod2_model-class Man page
MAXENT.Tsuruoka_biomod2_model Man page
MAXENT.Tsuruoka_biomod2_model-class Man page
Print_Default_ModelingOptions Man page
ProbDensFunc Man page
Projection Man page
Projection,ANY,ANY,RasterStack-method Man page
Projection,ANY,ANY,data.frame-method Man page
RF_biomod2_model Man page
RF_biomod2_model-class Man page
RasterBrick-method Man page
RasterLayer-method Man page
RasterStack-method Man page
RemoveProperly Man page
RemoveProperly,BIOMOD.models.out-method Man page
SRE_biomod2_model Man page
SRE_biomod2_model-class Man page
SampleMat2 Man page
array-method Man page
biomod2 Man page
biomod2-package Man page
biomod2_ensemble_model Man page
biomod2_ensemble_model-class Man page
biomod2_model Man page
biomod2_model-class Man page
calculate.stat Man page
check_data_range Man page
data.frame-method Man page
disk.pseudo.abs.selection Man page
disk.pseudo.abs.selection,ANY,RasterStack-method Man page
disk.pseudo.abs.selection,ANY,SpatialPointsDataFrame-method Man page
evaluate Man page
free Man page
free,BIOMOD.projection.out-method Man page
full_suffling Man page
getEM_needed_models Man page
getEM_needed_models,BIOMOD.EnsembleModeling.out-method Man page
getEMalgos Man page
getEMalgos,BIOMOD.EnsembleModeling.out-method Man page
getEMbuiltModels Man page
getEMbuiltModels,BIOMOD.EnsembleModeling.out-method Man page
getEMeval Man page
getEMeval,BIOMOD.EnsembleModeling.out-method Man page
getEMkeptModels Man page
getEMkeptModels,BIOMOD.EnsembleModeling.out-method Man page
getFormalModel Man page
getFormalModel,biomod2_model-method Man page
getModelsBuiltModels Man page
getModelsBuiltModels,BIOMOD.models.out-method Man page
getModelsEvaluations Man page
getModelsEvaluations,BIOMOD.models.out-method Man page
getModelsInputData Man page
getModelsInputData,BIOMOD.models.out-method Man page
getModelsOptions Man page
getModelsOptions,BIOMOD.models.out-method Man page
getModelsPrediction Man page
getModelsPrediction,BIOMOD.models.out-method Man page
getModelsPredictionEval Man page
getModelsPredictionEval,BIOMOD.models.out-method Man page
getModelsVarImport Man page
getModelsVarImport,BIOMOD.models.out-method Man page
getProjection Man page
getProjection,BIOMOD.projection.out-method Man page
getScalingModel Man page
getScalingModel,biomod2_model-method Man page
getStatOptimValue Man page
get_built_models Man page Man page
get_built_models,BIOMOD.EnsembleModeling.out-method Man page Man page
get_built_models,BIOMOD.models.out-method Man page
get_calib_lines Man page
get_calib_lines,BIOMOD.models.out-method Man page
get_evaluations Man page Man page
get_evaluations,BIOMOD.EnsembleModeling.out-method Man page Man page
get_evaluations,BIOMOD.models.out-method Man page
get_formal_data Man page
get_formal_data,BIOMOD.models.out-method Man page
get_formal_model Man page
get_formal_model,biomod2_model-method Man page
get_kept_models Man page
get_kept_models,BIOMOD.EnsembleModeling.out-method Man page
get_needed_models Man page
get_needed_models,BIOMOD.EnsembleModeling.out-method Man page
get_options Man page
get_options,BIOMOD.models.out-method Man page
get_predictions Man page Man page Man page
get_predictions,BIOMOD.EnsembleModeling.out-method Man page
get_predictions,BIOMOD.models.out-method Man page Man page
get_predictions,BIOMOD.projection.out-method Man page Man page
get_projected_models Man page
get_projected_models,BIOMOD.projection.out-method Man page
get_scaling_model Man page
get_scaling_model,biomod2_model-method Man page
get_var_range Man page
get_var_type Man page
get_variables_importance Man page
get_variables_importance,BIOMOD.EnsembleModeling.out-method Man page
get_variables_importance,BIOMOD.models.out-method Man page
level.plot Man page
load_stored_object Man page
load_stored_object,BIOMOD.stored.data-method Man page
makeFormula Man page
matrix-method Man page
models_scores_graph Man page
multiple.plot Man page
numeric-method Man page
plot,BIOMOD.formated.data,missing-method Man page
plot,BIOMOD.formated.data.PA,missing-method Man page
plot,BIOMOD.projection.out,missing-method Man page
predict,ANN_biomod2_model-method Man page
predict,CTA_biomod2_model-method Man page
predict,EMca_biomod2_model-method Man page
predict,EMci_biomod2_model-method Man page
predict,EMcv_biomod2_model-method Man page
predict,EMmean_biomod2_model-method Man page
predict,EMmedian_biomod2_model-method Man page
predict,EMwmean_biomod2_model-method Man page
predict,FDA_biomod2_model-method Man page
predict,GAM_biomod2_model-method Man page
predict,GBM_biomod2_model-method Man page
predict,GLM_biomod2_model-method Man page
predict,MARS_biomod2_model-method Man page
predict,MAXENT.Phillips_biomod2_model-method Man page
predict,MAXENT.Tsuruoka_biomod2_model-method Man page
predict,RF_biomod2_model-method Man page
predict,SRE_biomod2_model-method Man page
random.pseudo.abs.selection Man page
random.pseudo.abs.selection,ANY,RasterStack-method Man page
random.pseudo.abs.selection,ANY,SpatialPointsDataFrame-method Man page
randomise_data Man page
response.plot Man page
response.plot2 Man page
sample.factor.levels Man page
show,BIOMOD.EnsembleModeling.out-method Man page
show,BIOMOD.Model.Options-method Man page
show,BIOMOD.formated.data-method Man page
show,BIOMOD.formated.data.PA-method Man page
show,BIOMOD.models.out-method Man page
show,BIOMOD.projection.out-method Man page
show,biomod2_model-method Man page
sre Man page
sre.pseudo.abs.selection Man page
sre.pseudo.abs.selection,ANY,RasterStack-method Man page
sre.pseudo.abs.selection,ANY,SpatialPointsDataFrame-method Man page
update_objects Man page
user.defined.pseudo.abs.selection Man page
user.defined.pseudo.abs.selection,ANY,RasterStack-method Man page
user.defined.pseudo.abs.selection,ANY,SpatialPointsDataFrame-met Man page
variables_importance Man page
biomod2 documentation built on May 2, 2019, 5:08 p.m.

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