BIOMOD.formated.data-class: BIOMOD_FormatingData() outputs objects class

Description Slots Author(s) Examples

Description

BIOMOD.formated.data objects are created, used and returned by BIOMOD functions. It's contains the minimal set of data biomod2 needs to work. Input data given to BIOMOD_FormatingData are rearanged to fit with BIOMOD_Modeling input format. All data are stored into matrix (even environemental raster) explaining why some objects appears to be quite heavy.

If you ask for pseudo absences selection in BIOMOD_FormatingData, you will get a BIOMOD.formated.data.PA, else you will get a BIOMOD.formated.data.PA object.

Slots

BIOMOD.formated.data

sp.name:

"character", species name

coord:

"data.frame", species points XY coordinates

data.species:

"numeric", species presences, absences and no information kept points

data.env.var:

"data.frame", explanatory variables associated to species points

has.data.eval:

"logical", was specific models evaluation dataset given ?

eval.coord:

"data.frame", species models evaluation points XY coordinates

eval.data.species:

"numeric", species presences, absences and no information models evaluation kept points

eval.data.env.var:

"data.frame", explanatory variables associated to models evaluation species points

BIOMOD.formated.data

sp.name:

"character", species name

coord:

"data.frame", species points XY coordinates

data.species:

"numeric", species presences, absences and no information kept points

data.env.var:

"data.frame", explanatory variables associated to species points

has.data.eval:

"logical", was specific models evaluation dataset given ?

eval.coord:

"data.frame", species models evaluation points XY coordinates

eval.data.species:

"numeric", species presences, absences and no information models evaluation kept points

eval.data.env.var:

"data.frame", explanatory variables associated to models evaluation species points

PA:

"data.frame", each column contains 1 or 0 indicating for each species points if it was select or not in associated PA dataset

Author(s)

Damien Georges

Examples

1
showClass("BIOMOD.formated.data")

Example output

Loading required package: sp
Loading required package: raster
Loading required package: parallel
Loading required package: reshape
Loading required package: ggplot2
biomod2 3.3-7 loaded.

Type browseVignettes(package='biomod2') to access directly biomod2 vignettes.
Class "BIOMOD.formated.data" [package "biomod2"]

Slots:
                                                                              
Name:            sp.name             coord      data.species      data.env.var
Class:         character        data.frame           numeric        data.frame
                                                                              
Name:          data.mask     has.data.eval        eval.coord eval.data.species
Class:       RasterStack           logical        data.frame           numeric
                        
Name:  eval.data.env.var
Class:        data.frame

Known Subclasses: "BIOMOD.formated.data.PA"

biomod2 documentation built on May 31, 2017, 2:55 a.m.