Description Slots Author(s) Examples
BIOMOD.formated.data objects are created, used and returned by BIOMOD functions. It's contains the minimal set of data biomod2 needs to work. Input data given to BIOMOD_FormatingData
are rearanged to fit with BIOMOD_Modeling
input format. All data are stored into matrix (even environemental raster) explaining why some objects appears to be quite heavy.
If you ask for pseudo absences selection in BIOMOD_FormatingData
, you will get a BIOMOD.formated.data.PA
, else you will get a BIOMOD.formated.data.PA
object.
output of: BIOMOD_FormatingData
input of: BIOMOD_Modeling
BIOMOD.formated.data
sp.name
:"character", species name
coord
:"data.frame", species points XY coordinates
data.species
:"numeric", species presences, absences and no information kept points
data.env.var
:"data.frame", explanatory variables associated to species points
has.data.eval
:"logical", was specific models evaluation dataset given ?
eval.coord
:"data.frame", species models evaluation points XY coordinates
eval.data.species
:"numeric", species presences, absences and no information models evaluation kept points
eval.data.env.var
:"data.frame", explanatory variables associated to models evaluation species points
BIOMOD.formated.data
sp.name
:"character", species name
coord
:"data.frame", species points XY coordinates
data.species
:"numeric", species presences, absences and no information kept points
data.env.var
:"data.frame", explanatory variables associated to species points
has.data.eval
:"logical", was specific models evaluation dataset given ?
eval.coord
:"data.frame", species models evaluation points XY coordinates
eval.data.species
:"numeric", species presences, absences and no information models evaluation kept points
eval.data.env.var
:"data.frame", explanatory variables associated to models evaluation species points
PA
:"data.frame", each column contains 1 or 0 indicating for each species points if it was select or not in associated PA dataset
Damien Georges
1 | showClass("BIOMOD.formated.data")
|
Loading required package: sp
Loading required package: raster
Loading required package: parallel
Loading required package: reshape
Loading required package: ggplot2
biomod2 3.3-7 loaded.
Type browseVignettes(package='biomod2') to access directly biomod2 vignettes.
Class "BIOMOD.formated.data" [package "biomod2"]
Slots:
Name: sp.name coord data.species data.env.var
Class: character data.frame numeric data.frame
Name: data.mask has.data.eval eval.coord eval.data.species
Class: RasterStack logical data.frame numeric
Name: eval.data.env.var
Class: data.frame
Known Subclasses: "BIOMOD.formated.data.PA"
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