API for biomod2
Ensemble Platform for Species Distribution Modeling

Global functions
.Models.prepare.data Man page
.Models.prepare.data,BIOMOD.formated.data-method Man page
.Models.prepare.data,BIOMOD.formated.data.PA-method Man page
.Projection.do.proj Man page
.Projection.do.proj,ANY,RasterStack-method Man page
.Projection.do.proj,ANY,data.frame-method Man page
.transform.outputs Man page
.transform.outputs,array-method Man page
.transform.outputs,list-method Man page
ANN_biomod2_model Man page
ANN_biomod2_model-class Man page
BIOMOD.EnsembleModeling.out Man page
BIOMOD.EnsembleModeling.out-class Man page
BIOMOD.Model.Options-class Man page
BIOMOD.formated.data Man page
BIOMOD.formated.data,data.frame,ANY-method Man page
BIOMOD.formated.data,numeric,RasterStack-method Man page
BIOMOD.formated.data,numeric,data.frame-method Man page
BIOMOD.formated.data,numeric,matrix-method Man page
BIOMOD.formated.data-class Man page
BIOMOD.formated.data.PA Man page Source code
BIOMOD.formated.data.PA-class Man page
BIOMOD.models.out-class Man page
BIOMOD.projection.out Man page
BIOMOD.projection.out-class Man page
BIOMOD.stored.array Man page
BIOMOD.stored.array-class Man page
BIOMOD.stored.data Man page
BIOMOD.stored.data-class Man page
BIOMOD.stored.data.frame Man page
BIOMOD.stored.data.frame-class Man page
BIOMOD.stored.files Man page
BIOMOD.stored.files-class Man page
BIOMOD.stored.formated.data Man page
BIOMOD.stored.formated.data-class Man page
BIOMOD.stored.models.options Man page
BIOMOD.stored.models.options-class Man page
BIOMOD.stored.models.out Man page
BIOMOD.stored.models.out-class Man page
BIOMOD.stored.raster.stack Man page
BIOMOD.stored.raster.stack-class Man page
BIOMOD_ConvertOldRun Man page Source code
BIOMOD_EnsembleForecasting Man page
BIOMOD_EnsembleForecasting.check.args Source code
BIOMOD_EnsembleModeling Man page
BIOMOD_EnsembleModeling.check.args Source code
BIOMOD_FormatingData Man page
BIOMOD_FormatingData.check.args Source code
BIOMOD_LoadModels Man page Source code
BIOMOD_LoadModels.check.args Source code
BIOMOD_Modeling Man page Source code
BIOMOD_ModelingOptions Man page
BIOMOD_Projection Man page
BIOMOD_Projection.check.args Source code
BIOMOD_RangeSize Man page
BIOMOD_RangeSize,RasterLayer,RasterLayer-method Man page
BIOMOD_RangeSize,RasterLayer,RasterStack-method Man page
BIOMOD_RangeSize,RasterStack,RasterStack-method Man page
BIOMOD_RangeSize,array,array-method Man page
BIOMOD_RangeSize,data.frame,data.frame-method Man page
BIOMOD_RangeSize-methods Man page
BIOMOD_RangeSize.check.args Source code
BIOMOD_cv Man page Source code
BIOMOD_presenceonly Man page Source code
BIOMOD_tuning Man page Source code
BinaryTransformation Man page
BinaryTransformation, Man page
BinaryTransformation,RasterBrick-method Man page
BinaryTransformation,RasterLayer-method Man page
BinaryTransformation,RasterStack-method Man page
BinaryTransformation,array-method Man page
BinaryTransformation,data.frame-method Man page
BinaryTransformation,matrix-method Man page
BinaryTransformation,numeric-method Man page
Biomod.Models Source code
Biomod.Models.check Source code
Biomod.Models.loop Source code
CTA_biomod2_model Man page
CTA_biomod2_model-class Man page
CV.nnet Source code
CleverCut Source code
Construct.default.biomod2.modeling.obj Source code
CustomIndexMaker Man page
DF_to_ARRAY Man page Source code
Delete.Maxent.WorkDir Source code
EMca_biomod2_model Man page
EMca_biomod2_model-class Man page
EMci_biomod2_model Man page
EMci_biomod2_model-class Man page
EMcv_biomod2_model Man page
EMcv_biomod2_model-class Man page
EMmean_biomod2_model Man page
EMmean_biomod2_model-class Man page
EMmedian_biomod2_model Man page
EMmedian_biomod2_model-class Man page
EMwmean_biomod2_model Man page
EMwmean_biomod2_model-class Man page
FDA_biomod2_model Man page
FDA_biomod2_model-class Man page
FilteringTransformation Man page
FilteringTransformation,RasterBrick-method Man page
FilteringTransformation,RasterLayer-method Man page
FilteringTransformation,RasterStack-method Man page
FilteringTransformation,array-method Man page
FilteringTransformation,data.frame-method Man page
FilteringTransformation,matrix-method Man page
FilteringTransformation,numeric-method Man page
FilteringTransformation-methods Man page
Find.Optim.Stat Man page Source code
GAM_biomod2_model Man page
GAM_biomod2_model-class Man page
GBM_biomod2_model Man page
GBM_biomod2_model-class Man page
GLM_biomod2_model Man page
GLM_biomod2_model-class Man page
LIST_to_ARRAY Man page Source code
MARS_biomod2_model Man page
MARS_biomod2_model-class Man page
MAXENT.Phillips_biomod2_model Man page
MAXENT.Phillips_biomod2_model-class Man page
MAXENT.Tsuruoka_biomod2_model Man page
MAXENT.Tsuruoka_biomod2_model-class Man page
Models.check.EF.args Source code
Models.check.args Source code
Models.dependencies Source code
Models.prepare.workdir Source code
Models.print.modeling.summary Source code
Prepare.Maxent.WorkDir Source code
Print_Default_ModelingOptions Man page Source code
ProbDensFunc Man page
ProbDensFunc.checkArgs Source code
Projection Man page
Projection,ANY,ANY,RasterStack-method Man page
Projection,ANY,ANY,data.frame-method Man page
RF_biomod2_model Man page
RF_biomod2_model-class Man page
RasterBrick-method Man page
RasterLayer-method Man page
RasterStack-method Man page
RemoveProperly Man page
RemoveProperly,BIOMOD.models.out-method Man page
Rescaler5 Source code
SRE_biomod2_model Man page
SRE_biomod2_model-class Man page
SampleMat Source code
SampleMat2 Man page Source code
add_PA_rownames Source code
array-method Man page
as.ggdat.1D Source code
as.ggdat.2D Source code
automatic_weights_creation Source code
biomod2 Man page
biomod2-package Man page
biomod2_ensemble_model Man page
biomod2_ensemble_model-class Man page
biomod2_model Man page
biomod2_model-class Man page
bmCat Source code
build.clamping.mask Source code
calculate.stat Man page Source code
check.java.installed Source code
check.params.pseudo.absences.sampling Source code
check.params.sre Source code
check_data_range Man page Source code
contagency.table.check Source code
create.maxent.bg.dir Source code
data.frame-method Man page
disk.pseudo.abs.selection Man page
disk.pseudo.abs.selection,ANY,RasterStack-method Man page
disk.pseudo.abs.selection,ANY,SpatialPointsDataFrame-method Man page
em.models.assembling Source code
evaluate Man page Source code
evaluate.biomod2.ensemble.models.out Source code
evaluate.biomod2.formal.models Source code
evaluate.biomod2.models.out Source code
free Man page
free,BIOMOD.projection.out-method Man page
full_suffling Man page Source code
get.nb.true.abs Source code
getEM_needed_models Man page
getEM_needed_models,BIOMOD.EnsembleModeling.out-method Man page
getEMalgos Man page
getEMalgos,BIOMOD.EnsembleModeling.out-method Man page
getEMbuiltModels Man page
getEMbuiltModels,BIOMOD.EnsembleModeling.out-method Man page
getEMeval Man page
getEMeval,BIOMOD.EnsembleModeling.out-method Man page
getEMkeptModels Man page
getEMkeptModels,BIOMOD.EnsembleModeling.out-method Man page
getFormalModel Man page
getFormalModel,biomod2_model-method Man page
getModelsBuiltModels Man page
getModelsBuiltModels,BIOMOD.models.out-method Man page
getModelsEvaluations Man page
getModelsEvaluations,BIOMOD.models.out-method Man page
getModelsInputData Man page
getModelsInputData,BIOMOD.models.out-method Man page
getModelsOptions Man page
getModelsOptions,BIOMOD.models.out-method Man page
getModelsPrediction Man page
getModelsPrediction,BIOMOD.models.out-method Man page
getModelsPredictionEval Man page
getModelsPredictionEval,BIOMOD.models.out-method Man page
getModelsVarImport Man page
getModelsVarImport,BIOMOD.models.out-method Man page
getProjection Man page
getProjection,BIOMOD.projection.out-method Man page
getScalingModel Man page
getScalingModel,biomod2_model-method Man page
getStatOptimValue Man page Source code
get_built_models Man page Man page
get_built_models,BIOMOD.EnsembleModeling.out-method Man page Man page
get_built_models,BIOMOD.models.out-method Man page
get_calib_lines Man page
get_calib_lines,BIOMOD.models.out-method Man page
get_evaluations Man page Man page
get_evaluations,BIOMOD.EnsembleModeling.out-method Man page Man page
get_evaluations,BIOMOD.models.out-method Man page
get_formal_data Man page
get_formal_data,BIOMOD.models.out-method Man page
get_formal_model Man page
get_formal_model,biomod2_model-method Man page
get_kept_models Man page
get_kept_models,BIOMOD.EnsembleModeling.out-method Man page
get_needed_models Man page
get_needed_models,BIOMOD.EnsembleModeling.out-method Man page
get_needed_predictions Source code
get_options Man page
get_options,BIOMOD.models.out-method Man page
get_predictions Man page Man page Man page
get_predictions,BIOMOD.EnsembleModeling.out-method Man page
get_predictions,BIOMOD.models.out-method Man page Man page
get_predictions,BIOMOD.projection.out-method Man page Man page
get_projected_models Man page
get_projected_models,BIOMOD.projection.out-method Man page
get_scaling_model Man page
get_scaling_model,biomod2_model-method Man page
get_var_range Man page Source code
get_var_type Man page Source code
get_variables_importance Man page
get_variables_importance,BIOMOD.EnsembleModeling.out-method Man page
get_variables_importance,BIOMOD.models.out-method Man page
guess.scale Source code
level.plot Man page
load_stored_object Man page
load_stored_object,BIOMOD.stored.data-method Man page
makeFormula Man page
matrix-method Man page
models_scores_graph Man page Source code
models_scores_graph_check_args Source code
multiple.plot Man page
nb.available.pa.cells Source code
numeric-method Man page
onAttach Source code
plot,BIOMOD.formated.data,missing-method Man page
plot,BIOMOD.formated.data.PA,missing-method Man page
plot,BIOMOD.projection.out,missing-method Man page
predict,ANN_biomod2_model-method Man page
predict,CTA_biomod2_model-method Man page
predict,EMca_biomod2_model-method Man page
predict,EMci_biomod2_model-method Man page
predict,EMcv_biomod2_model-method Man page
predict,EMmean_biomod2_model-method Man page
predict,EMmedian_biomod2_model-method Man page
predict,EMwmean_biomod2_model-method Man page
predict,FDA_biomod2_model-method Man page
predict,GAM_biomod2_model-method Man page
predict,GBM_biomod2_model-method Man page
predict,GLM_biomod2_model-method Man page
predict,MARS_biomod2_model-method Man page
predict,MAXENT.Phillips_biomod2_model-method Man page
predict,MAXENT.Tsuruoka_biomod2_model-method Man page
predict,RF_biomod2_model-method Man page
predict,SRE_biomod2_model-method Man page
predict.ANN_biomod2_model.RasterStack Source code
predict.ANN_biomod2_model.data.frame Source code
predict.CTA_biomod2_model.RasterStack Source code
predict.CTA_biomod2_model.data.frame Source code
predict.EMca_biomod2_model.RasterStack Source code
predict.EMca_biomod2_model.data.frame Source code
predict.EMci_biomod2_model.RasterStack Source code
predict.EMci_biomod2_model.data.frame Source code
predict.EMcv_biomod2_model.RasterStack Source code
predict.EMcv_biomod2_model.data.frame Source code
predict.EMmean_biomod2_model.RasterStack Source code
predict.EMmean_biomod2_model.data.frame Source code
predict.EMmedian_biomod2_model.RasterStack Source code
predict.EMmedian_biomod2_model.data.frame Source code
predict.EMwmean_biomod2_model.RasterStack Source code
predict.EMwmean_biomod2_model.data.frame Source code
predict.FDA_biomod2_model.RasterStack Source code
predict.FDA_biomod2_model.data.frame Source code
predict.GAM_biomod2_model.RasterStack Source code
predict.GAM_biomod2_model.data.frame Source code
predict.GBM_biomod2_model.RasterStack Source code
predict.GBM_biomod2_model.data.frame Source code
predict.GLM_biomod2_model.RasterStack Source code
predict.GLM_biomod2_model.data.frame Source code
predict.MARS_biomod2_model.RasterStack Source code
predict.MARS_biomod2_model.data.frame Source code
predict.MAXENT.Phillips_biomod2_model.RasterStack Source code
predict.MAXENT.Phillips_biomod2_model.data.frame Source code
predict.MAXENT.Tsuruoka_biomod2_model.RasterStack Source code
predict.MAXENT.Tsuruoka_biomod2_model.data.frame Source code
predict.RF_biomod2_model.RasterStack Source code
predict.RF_biomod2_model.data.frame Source code
predict.SRE_biomod2_model.RasterStack Source code
predict.SRE_biomod2_model.data.frame Source code
print.control Source code
rand.pseudo.abs.selection Source code
random.pseudo.abs.selection Man page
random.pseudo.abs.selection,ANY,RasterStack-method Man page
random.pseudo.abs.selection,ANY,SpatialPointsDataFrame-method Man page
randomise_data Man page Source code
response.plot Man page
response.plot2 Man page
response.plot2.check.arg Source code
sample.factor.levels Man page Source code
sample.factor.levels.data.frame Source code
sample.factor.levels.data.frame.old Source code
sample.factor.levels.raster Source code
scaling_model Source code
show,BIOMOD.EnsembleModeling.out-method Man page
show,BIOMOD.Model.Options-method Man page
show,BIOMOD.formated.data-method Man page
show,BIOMOD.formated.data.PA-method Man page
show,BIOMOD.models.out-method Man page
show,BIOMOD.projection.out-method Man page
show,biomod2_model-method Man page
sre Man page Source code
sre.projection Source code
sre.pseudo.abs.selection Man page
sre.pseudo.abs.selection,ANY,RasterStack-method Man page
sre.pseudo.abs.selection,ANY,SpatialPointsDataFrame-method Man page
test_slots Source code
testnull Source code
update.objects_BIOMOD.formated.data Source code
update.objects_BIOMOD.models.out Source code
update.objects_biomod2_model Source code
update_objects Man page Source code
user.defined.pseudo.abs.selection Man page
user.defined.pseudo.abs.selection,ANY,RasterStack-method Man page
user.defined.pseudo.abs.selection,ANY,SpatialPointsDataFrame-met Man page
variables_importance Man page Source code
variables_importance.check.args Source code
biomod2 documentation built on May 31, 2017, 2:55 a.m.