BIOMOD.models.out-class: BIOMOD_modelling() outputs objects class

In biomod2: Ensemble Platform for Species Distribution Modeling

Description

The BIOMOD.models.out objects are created, used and returned by BIOMOD functions.

• output of: BIOMOD_Modeling

• input of: BIOMOD_EnsembleModeling, BIOMOD_Projection

Slots

BIOMOD.models.out objects

modeling.id:

"character", id of modeling procedure

sp.name:

"character", species name

expl.var.names:

"character", explanatory variables names

has.evaluation.data:

"logical", is some data are reserved for evaluating models?

models.computed:

"character", names of computed models

models.failed:

"character", names of failed models

models.evaluation:

"BIOMOD.stored.array", evaluations of each model computed according to selected evaluation methods

variables.importances:

"BIOMOD.stored.array", models variable importances

models.prediction:

"BIOMOD.stored.array", predictions of each models on their own calibration + validation dataset

models.prediction.eval:

"BIOMOD.stored.array", predictions of each models on evaluation dataset (if defined)

formated.input.data:

"BIOMOD.stored.formated.data", input data

calib.lines:

"BIOMOD.stored.array", calibrations and evaluation lines selected for each run

models.options:

"BIOMOD.stored.models.options", options used to build each model

rescal.all.models:

"logical", is all models scaling done?

link:

'character', the path to object hard drive copy

Author(s)

Damien Georges

Examples

showClass("BIOMOD.models.out")

Example output

Loading required package: sp
Loading required package: raster
Loading required package: parallel
Loading required package: reshape
Loading required package: ggplot2
biomod2 3.3-7 loaded.

Type browseVignettes(package='biomod2') to access directly biomod2 vignettes.
Class "BIOMOD.models.out" [package "biomod2"]

Slots:
                                                                
Name:                   modeling.id                      sp.name
Class:                    character                    character
                                                                
Name:                expl.var.names              models.computed
Class:                    character                    character
                                                                
Name:                 models.failed          has.evaluation.data
Class:                    character                      logical
                                                                
Name:             rescal.all.models            models.evaluation
Class:                      logical          BIOMOD.stored.array
                                                                
Name:         variables.importances            models.prediction
Class:          BIOMOD.stored.array          BIOMOD.stored.array
                                                                
Name:        models.prediction.eval          formated.input.data
Class:          BIOMOD.stored.array  BIOMOD.stored.formated.data
                                                                
Name:                   calib.lines               models.options
Class:          BIOMOD.stored.array BIOMOD.stored.models.options
                                   
Name:                          link
Class:                    character

biomod2 documentation built on May 2, 2019, 5:08 p.m.