Man pages for biomod2
Ensemble Platform for Species Distribution Modeling
| BinaryTransformation-methods | Convert species' probability of occurrence into binary... |
| biomod2.inner-methods | biomod2 internal functions |
| biomod2_model-class | biomod2 models objects class and functions |
| biomod2-package | Species Distribution Modeling within an Ensemble Forecasting... |
| BIOMOD_ConvertOldRun | Convert objects and outputs from BIOMOD.xx into biomod2.xx... |
| BIOMOD_cv | Custom models cross-validation procedure |
| BIOMOD_EnsembleForecasting | Ensemble projections of species over space and time |
| BIOMOD_EnsembleModeling | Create and evaluate an ensemble set of models and predictions |
| BIOMOD.EnsembleModeling.out-class | BIOMOD_EnsembleModeling() outputs objects class |
| BIOMOD.EnsembleModeling.out-methods | BIOMOD.EnsembleModeling.out getters |
| BIOMOD.formated.data-class | BIOMOD_FormatingData() outputs objects class |
| BIOMOD_FormatingData | Initialise the datasets for usage in 'biomod2' |
| BIOMOD_LoadModels | Load models built within BIOMOD_Modeling function |
| BIOMOD_Modeling | Run a range of species distribution models |
| BIOMOD_ModelingOptions | Configure the modeling options for each selected model |
| BIOMOD.Model.Options-class | BIOMOD_ModelingOptions() outputs objects class |
| BIOMOD.models.out-class | BIOMOD_modelling() outputs objects class |
| BIOMOD.models.out-methods | BIOMOD.models.out getters |
| BIOMOD.models.out-RemoveProperly | remove properly BIOMOD_Modeling outputs |
| BIOMOD_presenceonly | evaluate models with presences only metrics |
| BIOMOD_Projection | Project the calibrated models within 'biomod2' into new space... |
| BIOMOD.projection.out-class | BIOMOD_Projection() outputs objects class |
| BIOMOD.projection.out-methods | BIOMOD.projection.out getters |
| BIOMOD_RangeSize | Analysis of the range size changes |
| BIOMOD.stored.objects-class | BIOMOD.stored.xxx objects class |
| BIOMOD.stored.objects-methods | BIOMOD.stored.objects functions |
| BIOMOD_tuning | Tune models parameters |
| calculate.stat | Calculate evaluation metrics based on a misclassification... |
| CustomIndexMaker | Replace default package Index help file by a custom one. |
| deprecated_functions | biomod2 deprecated functions |
| DF_to_ARRAY | Convert a biomod2 data.frame (or list) into array |
| evaluate | biomod2 modelling outputs evaluation |
| FilteringTransformation | Convert species' probability of occurrence into binary... |
| Find.Optim.Stat | Calculate the best score according to a given evaluation... |
| full_shuffling | data set shuffling tool |
| getStatOptimValue | get the optimal score of evaluation statistical metrics |
| level.plot | Plot 2-dimensional data for visualizing distribution of... |
| makeFormula | Standardized formula maker |
| models_scores_graph | Produce models evaluation bi-dimensional graph |
| multiple.plot | Plot and compare prediction maps within BIOMOD |
| Print_Default_ModelingOptions | Get default values of BIOMOD inner models' options |
| ProbDensFunc | Probability Density Function |
| randomise_data | data set shuffling tool |
| response.plot | Analysis of the response curves of a model within Biomod |
| response.plot2 | Function for for plotting predicted responses from species... |
| sample.factor.levels | Tool to ensure the sampling of all levels of a factorial... |
| SampleMat2 | Sample binary vector |
| sre | Surface Range Envelope |
| update_objects | update biomod2 objects |
| variables_importance | Variables importance calculation |
