diveMove: Dive analysis and calibration

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Utilities to represent, visualize, filter, analyse, and summarize time-depth recorder (TDR) data. Miscellaneous functions for handling location data are also provided.

Author
Sebastian P. Luque <spluque@gmail.com>
Date of publication
2014-02-20 18:52:51
Maintainer
Sebastian P. Luque <spluque@gmail.com>
License
GPL-3
Version
1.3.9
URLs

View on R-Forge

Man pages

austFilter
Filter satellite locations
bout-methods
Methods for Plotting and Extracting the Bout Ending Criterion
bout-misc
Fit a Broken Stick Model on Log Frequency Data for...
bouts2MLE
Maximum Likelihood Model of mixture of 2 Poisson Processes
bouts2NLS
Fit mixture of 2 Poisson Processes to Log Frequency data
bouts3NLS
Fit mixture of 3 Poisson Processes to Log Frequency data
calibrateDepth
Calibrate Depth and Generate a "TDRcalibrate" object
calibrateSpeed
Calibrate and build a "TDRcalibrate" object
detDive-internal
Detect dives from depth readings
detPhase-internal
Detect phases of activity from depth readings
distSpeed
Calculate distance and speed between locations
diveModel-class
Class "diveModel" for representing a model for identifying...
diveMove-internal
Internal diveMove Functions
diveMove-package
Dive Analysis and Calibration
dives
Sample of TDR data from a fur seal
diveStats
Per-dive statistics
extractDive-methods
Extract Dives from "TDR" or "TDRcalibrate" Objects
labDive-internal
Internal Functions used for Detection of Dives
plotDiveModel-methods
Methods for plotting models of dive phases
plotTDR-methods
Methods for plotting objects of class "TDR" and...
plotZOC-methods
Methods for visually assessing results of ZOC procedure
readLocs
Read comma-delimited file with location data
readTDR
Read comma-delimited file with "TDR" data
rqPlot
Plot of quantile regression for speed calibrations
sealLocs
Ringed and Gray Seal ARGOS Satellite Location Data
TDR-accessors
Coerce, Extractor, and Replacement methods for class "TDR"...
TDRcalibrate-accessors
Methods to Show and Extract Basic Information from...
TDRcalibrate-class
Class "TDRcalibrate" for dive analysis
TDR-class
Classes "TDR" and "TDRspeed" for representing TDR information
timeBudget-methods
Describe the Time Budget of Major Activities from...

Files in this package

diveMove/.Rinstignore
diveMove/ChangeLog
diveMove/DESCRIPTION
diveMove/NAMESPACE
diveMove/NEWS
diveMove/R
diveMove/R/AllClass.R
diveMove/R/AllGenerics.R
diveMove/R/AllMethod.R
diveMove/R/austFilter.R
diveMove/R/bouts.R
diveMove/R/calibrate.R
diveMove/R/detDive.R
diveMove/R/detPhase.R
diveMove/R/distSpeed.R
diveMove/R/diveStats.R
diveMove/R/oneDiveStats.R
diveMove/R/plotTDR.R
diveMove/R/plotZOC.R
diveMove/R/readLocs.R
diveMove/R/readTDR.R
diveMove/R/speedStats.R
diveMove/R/stampDive.R
diveMove/R/zoc.R
diveMove/R/zzz.R
diveMove/README
diveMove/build
diveMove/build/vignette.rds
diveMove/data
diveMove/data/dives.csv
diveMove/data/divesTDR.RData
diveMove/data/sealLocs.csv
diveMove/inst
diveMove/inst/CITATION
diveMove/inst/doc
diveMove/inst/doc/diveMove.R
diveMove/inst/doc/diveMove.Rnw
diveMove/inst/doc/diveMove.pdf
diveMove/man
diveMove/man/TDR-accessors.Rd
diveMove/man/TDR-class.Rd
diveMove/man/TDRcalibrate-accessors.Rd
diveMove/man/TDRcalibrate-class.Rd
diveMove/man/austFilter.Rd
diveMove/man/bout-methods.Rd
diveMove/man/bout-misc.Rd
diveMove/man/bouts2MLE.Rd
diveMove/man/bouts2NLS.Rd
diveMove/man/bouts3NLS.Rd
diveMove/man/calibrateDepth.Rd
diveMove/man/calibrateSpeed.Rd
diveMove/man/detDive-internal.Rd
diveMove/man/detPhase-internal.Rd
diveMove/man/distSpeed.Rd
diveMove/man/diveModel-class.Rd
diveMove/man/diveMove-internal.Rd
diveMove/man/diveMove-package.Rd
diveMove/man/diveStats.Rd
diveMove/man/dives.Rd
diveMove/man/extractDive-methods.Rd
diveMove/man/labDive-internal.Rd
diveMove/man/plotDiveModel-methods.Rd
diveMove/man/plotTDR-methods.Rd
diveMove/man/plotZOC-methods.Rd
diveMove/man/readLocs.Rd
diveMove/man/readTDR.Rd
diveMove/man/rqPlot.Rd
diveMove/man/sealLocs.Rd
diveMove/man/timeBudget-methods.Rd
diveMove/tests
diveMove/tests/calibrations.R
diveMove/tests/class-tests.R
diveMove/tests/final-stats.R
diveMove/vignettes
diveMove/vignettes/Makefile
diveMove/vignettes/biblioSPL.bib
diveMove/vignettes/diveMove.Rnw
diveMove/vignettes/tcltk.png