rwl.report: Do some reporting on a RWL object
In dplR: Dendrochronology Program Library in R
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
This function generates a small report on a rwl (or rwi) object
that gives the user some basic information on the data including the number of
series, the span of the data, the mean interseries correlation, the number of
missing rings (zeros), internal NA values, and rings that are very small,
or very large.
Usage
1
rwl.report(rwl,small.thresh=NA,big.thresh=NA)
Arguments
rwl
a data.frame of ring widths with
rownames(x) containing years and colnames(x)
containing each series ID such as produced by
read.rwl
small.thresh
a numeric value for the threshold value that will cause
small rings to be listed. If values is NA this will be omitted.
big.thresh
a numeric value for the threshold value that will cause
large rings to be listed. If values is NA this will be omitted.
Details
This report is a list containing the number of series, the mean length
of all the series, the first year, last year, the mean first-order
autocorrelation (via summary.rwl), the mean interseries
correlation (via interseries.cor), the years where a series has
a missing ring (zero), internal NA, very small ring, and very large rings.
This output of this function is not typically meant for the user to access
but has a print method that formats that data for the user.
Value
A list with elements containing descriptive information on the
rwl object.
Author(s)
Andy Bunn. Patched and improved by Mikko Korpela.
See Also
read.rwl, summary.rwl,
interseries.cor
Examples
1
2
3
4
5
data("gp.rwl")
rwl.report(rwl = gp.rwl)
# list very small (smallest 1pct) of rings as well
one.pct <- quantile(gp.rwl[gp.rwl != 0], na.rm=TRUE, probs=0.01)
rwl.report(rwl = gp.rwl, small.thresh = one.pct)
Example output
Number of dated series: 58
Number of measurements: 16408
Avg series length: 282.8966
Range: 421
Span: 1570 - 1990
Mean (Std dev) series intercorrelation: 0.6748932 (0.08072735)
Mean (Std dev) AR1: 0.7203621 (0.1259479)
-------------
Years with absent rings listed by series
Series 01A -- 1670 1729 1735 1748 1752 1773 1780 1782 1900 1902 1904 1918 1922
Series 01B -- 1670 1729 1735 1748 1752 1773 1782 1896 1900 1902 1904 1918 1922 1939
Series 03A -- 1782 1822
Series 03B -- 1780 1813 1818 1820 1822 1974
Series 05A -- 1822
Series 05B -- 1822 1971
Series 07A -- 1600 1670 1735 1748 1752 1773 1977 1981 1984
Series 07B -- 1735 1977 1981 1989
Series 10A -- 1951 1971 1974 1977 1981 1984 1989
Series 10B -- 1971 1974 1977 1984 1989
Series 12A -- 1735 1748 1752 1847 1989
Series 12B -- 1735 1748 1752 1773 1782 1847 1879 1963 1971 1974 1977
Series 14A -- 1748 1773 1971
Series 16B -- 1773 1977
Series 17A -- 1989
Series 17B -- 1971 1977 1989
Series 20A -- 1735 1748 1773 1780 1977 1989
Series 20B -- 1600 1670 1748
Series 22A -- 1780 1864 1951 1963 1971 1974 1977 1981 1984
Series 22B -- 1963 1971 1974 1977 1981 1984 1989
Series 31A -- 1735 1822
Series 31B -- 1735 1977
Series 32A -- 1654 1657 1670 1729 1735 1748 1752 1773 1782 1813 1879 1963 1971 1977
Series 32B -- 1654 1657 1670 1735 1748 1752 1773 1782 1822
Series 36A -- 1735 1748 1822 1951
Series 36B -- 1748 1822
Series 42A -- 1977 1984
Series 42B -- 1879
Series 47A -- 1729
Series 47B -- 1729
Series 48A -- 1974 1977 1989
Series 48B -- 1974 1977
Series 40A -- 1654 1682 1685 1696 1701 1703 1722 1729 1735 1748 1752 1773 1780 1782 1822 1984
Series 40B -- 1703 1735 1748
Series 39A -- 1654 1735 1748 1752 1773 1780 1782 1822 1841 1879
Series 39B -- 1729 1735 1748 1752 1773 1782 1822 1963 1989
194 absent rings (1.182%)
-------------
Years with internal NA values listed by series
None
Number of dated series: 58
Number of measurements: 16408
Avg series length: 282.8966
Range: 421
Span: 1570 - 1990
Mean (Std dev) series intercorrelation: 0.6748932 (0.08072735)
Mean (Std dev) AR1: 0.7203621 (0.1259479)
-------------
Years with absent rings listed by series
Series 01A -- 1670 1729 1735 1748 1752 1773 1780 1782 1900 1902 1904 1918 1922
Series 01B -- 1670 1729 1735 1748 1752 1773 1782 1896 1900 1902 1904 1918 1922 1939
Series 03A -- 1782 1822
Series 03B -- 1780 1813 1818 1820 1822 1974
Series 05A -- 1822
Series 05B -- 1822 1971
Series 07A -- 1600 1670 1735 1748 1752 1773 1977 1981 1984
Series 07B -- 1735 1977 1981 1989
Series 10A -- 1951 1971 1974 1977 1981 1984 1989
Series 10B -- 1971 1974 1977 1984 1989
Series 12A -- 1735 1748 1752 1847 1989
Series 12B -- 1735 1748 1752 1773 1782 1847 1879 1963 1971 1974 1977
Series 14A -- 1748 1773 1971
Series 16B -- 1773 1977
Series 17A -- 1989
Series 17B -- 1971 1977 1989
Series 20A -- 1735 1748 1773 1780 1977 1989
Series 20B -- 1600 1670 1748
Series 22A -- 1780 1864 1951 1963 1971 1974 1977 1981 1984
Series 22B -- 1963 1971 1974 1977 1981 1984 1989
Series 31A -- 1735 1822
Series 31B -- 1735 1977
Series 32A -- 1654 1657 1670 1729 1735 1748 1752 1773 1782 1813 1879 1963 1971 1977
Series 32B -- 1654 1657 1670 1735 1748 1752 1773 1782 1822
Series 36A -- 1735 1748 1822 1951
Series 36B -- 1748 1822
Series 42A -- 1977 1984
Series 42B -- 1879
Series 47A -- 1729
Series 47B -- 1729
Series 48A -- 1974 1977 1989
Series 48B -- 1974 1977
Series 40A -- 1654 1682 1685 1696 1701 1703 1722 1729 1735 1748 1752 1773 1780 1782 1822 1984
Series 40B -- 1703 1735 1748
Series 39A -- 1654 1735 1748 1752 1773 1780 1782 1822 1841 1879
Series 39B -- 1729 1735 1748 1752 1773 1782 1822 1963 1989
194 absent rings (1.182%)
-------------
Years with internal NA values listed by series
None
-------------
Years with values < 0.09 listed by series
Series 01A -- 1778 1847 1899
Series 01B -- 1685 1780 1847 1899
Series 03A -- 1735 1752 1820
Series 03B -- 1773 1782 1800 1817 1963 1977
Series 05B -- 1735 1782 1847 1879 1896 1899 1902 1963 1974
Series 07A -- 1782 1822 1971 1974 1979 1989
Series 07B -- 1654 1670 1748 1752 1971 1974
Series 10A -- 1963 1980 1985 1987 1990
Series 10B -- 1948 1956 1963 1970 1981 1987 1988 1990
Series 12A -- 1902
Series 12B -- 1822 1841 1948 1951 1969 1989
Series 14A -- 1752 1805 1847 1879 1904 1963 1977
Series 14B -- 1822 1951 1977
Series 16A -- 1735 1752 1773 1977 1989
Series 16B -- 1735 1877 1879
Series 17A -- 1963 1971 1974 1977
Series 17B -- 1735 1963 1974
Series 20A -- 1948 1951 1963 1971 1978 1981 1986 1987 1990
Series 20B -- 1735 1948 1951 1963 1971 1977
Series 22A -- 1956 1973 1983 1985
Series 22B -- 1960 1973 1978 1985
Series 23A -- 1986
Series 25A -- 1879
Series 31A -- 1748
Series 31B -- 1822 1951 1963 1971 1974
Series 32A -- 1653 1656 1736 1737 1754 1780 1801 1864 1948 1956
Series 32B -- 1653 1715 1729 1774
Series 36A -- 1752 1879 1963 1974 1977
Series 36B -- 1963 1977
Series 42A -- 1948 1971
Series 42B -- 1948
Series 44A -- 1974 1977 1979
Series 40A -- 1606 1695 1712 1716 1983
Series 40B -- 1606 1607 1609 1695 1696 1701
Series 39A -- 1729
Series 39B -- 1600 1654 1780 1841 1864 1971
dplR documentation built on May 2, 2019, 6:06 p.m.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value Author(s) See Also Examples
Description
This function generates a small report on a rwl (or rwi) object
that gives the user some basic information on the data including the number of
series, the span of the data, the mean interseries correlation, the number of
missing rings (zeros), internal NA values, and rings that are very small,
or very large.
Usage
1 | rwl.report(rwl,small.thresh=NA,big.thresh=NA)
|
Arguments
rwl |
a |
small.thresh |
a |
big.thresh |
a |
Details
This report is a list containing the number of series, the mean length
of all the series, the first year, last year, the mean first-order
autocorrelation (via summary.rwl), the mean interseries
correlation (via interseries.cor), the years where a series has
a missing ring (zero), internal NA, very small ring, and very large rings.
This output of this function is not typically meant for the user to access
but has a print method that formats that data for the user.
Value
A list with elements containing descriptive information on the
rwl object.
Author(s)
Andy Bunn. Patched and improved by Mikko Korpela.
See Also
read.rwl, summary.rwl,
interseries.cor
Examples
1 2 3 4 5 | data("gp.rwl")
rwl.report(rwl = gp.rwl)
# list very small (smallest 1pct) of rings as well
one.pct <- quantile(gp.rwl[gp.rwl != 0], na.rm=TRUE, probs=0.01)
rwl.report(rwl = gp.rwl, small.thresh = one.pct)
|
Example output
Number of dated series: 58
Number of measurements: 16408
Avg series length: 282.8966
Range: 421
Span: 1570 - 1990
Mean (Std dev) series intercorrelation: 0.6748932 (0.08072735)
Mean (Std dev) AR1: 0.7203621 (0.1259479)
-------------
Years with absent rings listed by series
Series 01A -- 1670 1729 1735 1748 1752 1773 1780 1782 1900 1902 1904 1918 1922
Series 01B -- 1670 1729 1735 1748 1752 1773 1782 1896 1900 1902 1904 1918 1922 1939
Series 03A -- 1782 1822
Series 03B -- 1780 1813 1818 1820 1822 1974
Series 05A -- 1822
Series 05B -- 1822 1971
Series 07A -- 1600 1670 1735 1748 1752 1773 1977 1981 1984
Series 07B -- 1735 1977 1981 1989
Series 10A -- 1951 1971 1974 1977 1981 1984 1989
Series 10B -- 1971 1974 1977 1984 1989
Series 12A -- 1735 1748 1752 1847 1989
Series 12B -- 1735 1748 1752 1773 1782 1847 1879 1963 1971 1974 1977
Series 14A -- 1748 1773 1971
Series 16B -- 1773 1977
Series 17A -- 1989
Series 17B -- 1971 1977 1989
Series 20A -- 1735 1748 1773 1780 1977 1989
Series 20B -- 1600 1670 1748
Series 22A -- 1780 1864 1951 1963 1971 1974 1977 1981 1984
Series 22B -- 1963 1971 1974 1977 1981 1984 1989
Series 31A -- 1735 1822
Series 31B -- 1735 1977
Series 32A -- 1654 1657 1670 1729 1735 1748 1752 1773 1782 1813 1879 1963 1971 1977
Series 32B -- 1654 1657 1670 1735 1748 1752 1773 1782 1822
Series 36A -- 1735 1748 1822 1951
Series 36B -- 1748 1822
Series 42A -- 1977 1984
Series 42B -- 1879
Series 47A -- 1729
Series 47B -- 1729
Series 48A -- 1974 1977 1989
Series 48B -- 1974 1977
Series 40A -- 1654 1682 1685 1696 1701 1703 1722 1729 1735 1748 1752 1773 1780 1782 1822 1984
Series 40B -- 1703 1735 1748
Series 39A -- 1654 1735 1748 1752 1773 1780 1782 1822 1841 1879
Series 39B -- 1729 1735 1748 1752 1773 1782 1822 1963 1989
194 absent rings (1.182%)
-------------
Years with internal NA values listed by series
None
Number of dated series: 58
Number of measurements: 16408
Avg series length: 282.8966
Range: 421
Span: 1570 - 1990
Mean (Std dev) series intercorrelation: 0.6748932 (0.08072735)
Mean (Std dev) AR1: 0.7203621 (0.1259479)
-------------
Years with absent rings listed by series
Series 01A -- 1670 1729 1735 1748 1752 1773 1780 1782 1900 1902 1904 1918 1922
Series 01B -- 1670 1729 1735 1748 1752 1773 1782 1896 1900 1902 1904 1918 1922 1939
Series 03A -- 1782 1822
Series 03B -- 1780 1813 1818 1820 1822 1974
Series 05A -- 1822
Series 05B -- 1822 1971
Series 07A -- 1600 1670 1735 1748 1752 1773 1977 1981 1984
Series 07B -- 1735 1977 1981 1989
Series 10A -- 1951 1971 1974 1977 1981 1984 1989
Series 10B -- 1971 1974 1977 1984 1989
Series 12A -- 1735 1748 1752 1847 1989
Series 12B -- 1735 1748 1752 1773 1782 1847 1879 1963 1971 1974 1977
Series 14A -- 1748 1773 1971
Series 16B -- 1773 1977
Series 17A -- 1989
Series 17B -- 1971 1977 1989
Series 20A -- 1735 1748 1773 1780 1977 1989
Series 20B -- 1600 1670 1748
Series 22A -- 1780 1864 1951 1963 1971 1974 1977 1981 1984
Series 22B -- 1963 1971 1974 1977 1981 1984 1989
Series 31A -- 1735 1822
Series 31B -- 1735 1977
Series 32A -- 1654 1657 1670 1729 1735 1748 1752 1773 1782 1813 1879 1963 1971 1977
Series 32B -- 1654 1657 1670 1735 1748 1752 1773 1782 1822
Series 36A -- 1735 1748 1822 1951
Series 36B -- 1748 1822
Series 42A -- 1977 1984
Series 42B -- 1879
Series 47A -- 1729
Series 47B -- 1729
Series 48A -- 1974 1977 1989
Series 48B -- 1974 1977
Series 40A -- 1654 1682 1685 1696 1701 1703 1722 1729 1735 1748 1752 1773 1780 1782 1822 1984
Series 40B -- 1703 1735 1748
Series 39A -- 1654 1735 1748 1752 1773 1780 1782 1822 1841 1879
Series 39B -- 1729 1735 1748 1752 1773 1782 1822 1963 1989
194 absent rings (1.182%)
-------------
Years with internal NA values listed by series
None
-------------
Years with values < 0.09 listed by series
Series 01A -- 1778 1847 1899
Series 01B -- 1685 1780 1847 1899
Series 03A -- 1735 1752 1820
Series 03B -- 1773 1782 1800 1817 1963 1977
Series 05B -- 1735 1782 1847 1879 1896 1899 1902 1963 1974
Series 07A -- 1782 1822 1971 1974 1979 1989
Series 07B -- 1654 1670 1748 1752 1971 1974
Series 10A -- 1963 1980 1985 1987 1990
Series 10B -- 1948 1956 1963 1970 1981 1987 1988 1990
Series 12A -- 1902
Series 12B -- 1822 1841 1948 1951 1969 1989
Series 14A -- 1752 1805 1847 1879 1904 1963 1977
Series 14B -- 1822 1951 1977
Series 16A -- 1735 1752 1773 1977 1989
Series 16B -- 1735 1877 1879
Series 17A -- 1963 1971 1974 1977
Series 17B -- 1735 1963 1974
Series 20A -- 1948 1951 1963 1971 1978 1981 1986 1987 1990
Series 20B -- 1735 1948 1951 1963 1971 1977
Series 22A -- 1956 1973 1983 1985
Series 22B -- 1960 1973 1978 1985
Series 23A -- 1986
Series 25A -- 1879
Series 31A -- 1748
Series 31B -- 1822 1951 1963 1971 1974
Series 32A -- 1653 1656 1736 1737 1754 1780 1801 1864 1948 1956
Series 32B -- 1653 1715 1729 1774
Series 36A -- 1752 1879 1963 1974 1977
Series 36B -- 1963 1977
Series 42A -- 1948 1971
Series 42B -- 1948
Series 44A -- 1974 1977 1979
Series 40A -- 1606 1695 1712 1716 1983
Series 40B -- 1606 1607 1609 1695 1696 1701
Series 39A -- 1729
Series 39B -- 1600 1654 1780 1841 1864 1971
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