| annotation | Annotation class and class functions | 
| apply_color_scheme | Apply a color scheme | 
| artemisColors | Artemis Colors | 
| auto_annotate | Auto-annotate dna_segs | 
| barto | Comparison of 4 Bartonella genomes | 
| c.dna_seg | Concatenate dna_seg objects | 
| chrY_subseg | Comparisons of subsegments of the Y chromosome in human and... | 
| comparison | Comparison class and class functions | 
| dna_seg | DNA segment (dna_seg) class and class functions | 
| gene_types | Gene types | 
| genoPlotR-package | Plot Publication-Grade Gene and Genome Maps | 
| human_nt | Human-readable nucleotide scale | 
| mauve_bbone | Mauve backbone of 4 Bartonella genomes | 
| middle | Middles of a dna_seg | 
| plot_gene_map | Plot gene and genome maps | 
| range | Range calculation | 
| read_functions | Reading functions | 
| reverse | Reverse objects | 
| seg_plot | seg_plot class and class functions | 
| three_genes | Three genes data set | 
| trim | Trimming data frames or more complex objects with >= 2... | 
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