| annotation | Annotation class and class functions |
| apply_color_scheme | Apply a color scheme |
| artemisColors | Artemis Colors |
| auto_annotate | Auto-annotate dna_segs |
| barto | Comparison of 4 Bartonella genomes |
| c.dna_seg | Concatenate dna_seg objects |
| chrY_subseg | Comparisons of subsegments of the Y chromosome in human and... |
| comparison | Comparison class and class functions |
| dna_seg | DNA segment (dna_seg) class and class functions |
| gene_types | Gene types |
| genoPlotR-package | Plot Publication-Grade Gene and Genome Maps |
| human_nt | Human-readable nucleotide scale |
| mauve_bbone | Mauve backbone of 4 Bartonella genomes |
| middle | Middles of a dna_seg |
| plot_gene_map | Plot gene and genome maps |
| range | Range calculation |
| read_functions | Reading functions |
| reverse | Reverse objects |
| seg_plot | seg_plot class and class functions |
| three_genes | Three genes data set |
| trim | Trimming data frames or more complex objects with >= 2... |
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