reverse: Reverse objects

In genoPlotR: Plot Publication-Grade Gene and Genome Maps

Description

Reverse objects, mainly dna_seg and comparison

Usage

reverse(x, ...)
## Default S3 method:
reverse(x, ...)
## S3 method for class 'dna_seg'
reverse(x, ...)
## S3 method for class 'comparison'
reverse(x, side = 0, ...)

Arguments

x	The object to reverse.
...	Unused.
side	In the case of comparisons, the side of the comparison that should be reversed. If side=1, the first side will be reversed. If side=2, the second side will be reversed. If side<1, no side is reversed. If side>2, both sides are reversed.

Value

The same object as input.

Author(s)

Lionel Guy

See Also

dna_seg, comparison

Examples

## load data
data(three_genes)

## on dna_seg
dna_segs[[1]]
reverse(dna_segs[[1]])
## on comparison
reverse(comparisons[[2]], side=1)
reverse(comparisons[[2]], side=3)

## With mauve backbone
data(mauve_bbone)
## Plot
plot_gene_map(dna_segs=bbone$dna_segs, comparisons=bbone$comparisons)

## Reverse B_bacilliformis, and the corresponding comparison (first "side")
bbone$dna_segs[[1]] <- reverse(bbone$dna_segs[[1]])
bbone$comparisons[[1]] <- reverse(bbone$comparisons[[1]], 1)
plot_gene_map(dna_segs=bbone$dna_segs, comparisons=bbone$comparisons)

genoPlotR documentation built on Jan. 5, 2021, 3:02 p.m.