mauve_bbone: Mauve backbone of 4 Bartonella genomes

Description Usage Format References Examples

Description

The result of a multiple genome alignment with Mauve.

Usage

1

Format

bbone, a list of two dataframes, representing the regions which are conserved in at least two genomes:

A bash script to obtain the same file as in the data is available in the extdata folder of the package. Find its location by running system.file('extdata/mauve.sh', package = 'genoPlotR').

The resulting backone file can then be read with read_mauve_backbone.

References

Mauve: http://asap.ahabs.wisc.edu/mauve/

Examples

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Example output

Loading required package: ade4
Loading required package: grid

genoPlotR documentation built on Sept. 13, 2017, 3:01 p.m.