mauve_bbone: Mauve backbone of 4 Bartonella genomes

In genoPlotR: Plot Publication-Grade Gene and Genome Maps

Description

The result of a multiple genome alignment with Mauve.

Usage

data(mauve_bbone)

Format

bbone, a list of two dataframes, representing the regions which are conserved in at least two genomes:

• dna_segswhich is a list of 4 dna_seg objects, containing the mauve blocks for each genome.

• comparisonswhich is a list of 3 comparison objects.

A bash script to obtain the same file as in the data is available in the extdata folder of the package. Find its location by running system.file('extdata/mauve.sh', package = 'genoPlotR').

The resulting backone file can then be read with read_mauve_backbone.

References

Mauve: http://asap.ahabs.wisc.edu/mauve/

Examples

data(mauve_bbone)
plot_gene_map(bbone$dna_segs, bbone$comparisons)

Example output

Loading required package: ade4
Loading required package: grid

genoPlotR documentation built on Jan. 5, 2021, 3:02 p.m.