barto: Comparison of 4 Bartonella genomes

Description Usage Format References Examples

Description

Comparison of 4 Bartonella genomes by BLAST.

Usage

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Format

barto, a list of three dataframes, representing the four genomes and their pairwise comparisons:

A bash script to obtain the same file as in the dataset is available in the extdata folder of the package. Find its location by running system.file('extdata/barto.sh', package = 'genoPlotR').

References

BLAST: http://www.ncbi.nlm.nih.gov/blast/

Examples

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data(barto)
plot_gene_map(barto$rnt_segs, barto$comparisons, gene_type="blocks")

Example output

Loading required package: ade4
Loading required package: grid

genoPlotR documentation built on June 23, 2018, 3 p.m.