Description Usage Arguments Details Value Examples
Simulate a sample of genes using the coalescent.
1 | sim.coalescent(total.number.of.demes,effective.size,migration.rate,mutation.rate,number.of.sampled.demes,sample.sizes,number.of.loci)
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total.number.of.demes |
total number of demes in the island model |
effective.size |
effective population size of each deme |
migration.rate |
rate of migration among demes |
mutation.rate |
mutation rate. The model assumes a 2-alleles model of mutations |
number.of.sampled.demes |
number of demes sampled |
sample.sizes |
number of genes sampled in each deme |
number.of.loci |
number of loci |
Simulate a sample of genes, using a coalescent-based simulator.
a ‘sample’ object
1 2 3 4 | ## This is to simulate a sample of genes.
sample <- sim.coalescent(total.number.of.demes = 100,effective.size = 1000,migration.rate = 0.001,mutation.rate = 0.000001,number.of.sampled.demes = 10,sample.sizes = 50,number.of.loci = 2)
sample
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