runNonmem: Process a Request for NONMEM Invocation

In metrumrg: Pharmacometric Tools for Data Preparation, Modeling, Simulation, and Reporting

Description

The heart of NONR, this function handles file-level details and dispatches the other major functions, especially runCommand and PLOTR.

Usage

runNonmem(
	run,
	...,
	command,
	project,
	wait,
	checkrunno,
	diag,
	fdata,
	epilog,
	dvname,
	logtrans,
	grp,
	grpnames,
	cont.cov,
	cat.cov,
	par.list,
	eta.list,
	missing,
	invisible,
	checksum,
	grid,
	nice,
	udef,
	compile,
	execute,
	split,
	plotfile=plotfilename(run,project,grp),
	rundir = filename(project,run),
	outfile = filename(rundir,run,'.lst'),
	streams = project,
	ctlfile = filename(streams,run,'.ctl'),
	purge=TRUE,
	sync=if(wait)'y'else'n',
	interface='nm.pl',
	perm.cond=NULL,
	pe=NA
)

Arguments

run	see NONR
command	see NONR
project	see NONR
wait	see NONR

checkrunno	see NONR
diag	see NONR
fdata	see NONR
epilog	see NONR
dvname	see NONR
logtrans	see NONR
grp	see NONR
grpnames	see NONR
cont.cov	see NONR
cat.cov	see NONR
par.list	see NONR
eta.list	see NONR
missing	see NONR
invisible	see NONR
checksum	see NONR
grid	see NONR
nice	see NONR
udef	see NONR
compile	see NONR
execute	see NONR
split	see NONR
plotfile	see PLOTR

rundir	the directory in which run will occur
outfile	see dataSynthesis
streams	where to find control streams
ctlfile	the original control stream
purge	whether to remove files as defined in purgeRunDir
sync	whether the R process should wait for the run to complete
interface	the name of a function to prepare NONMEM command lines
...	extra arguments for other functions
perm.cond	passed to PLOTR; defined here to prevent partial matching of pe argument to qsub
pe	passed to runCommand

Value

the result of the call to runCommand; or empty string if command is empty string.

Author(s)

Tim Bergsma

References

http://metrumrg.googlecode.com

See Also

• NONR

• dataSynthesis

• runCommand

• purgeRunDir

metrumrg documentation built on May 2, 2019, 5:55 p.m.