mets: Analysis of Multivariate Event Times

Implementation of various statistical models for multivariate event history data. Including multivariate cumulative incidence models, and bivariate random effects probit models (Liability models). Also contains two-stage binomial modelling that can do pairwise odds-ratio dependence modelling based marginal logistic regression models. This is an alternative to the alternating logistic regression approach (ALR).

Author
Klaus K. Holst and Thomas Scheike
Date of publication
2014-12-15 09:18:41
Maintainer
Klaus K. Holst <klaus@holst.it>
License
GPL (>=2)
Version
1.0.1
URLs

View on R-Forge

Man pages

aalenfrailty
Aalen frailty model
back2timereg
Convert to timereg object
bicomprisk
Estimation of concordance in bivariate competing risks data
binomial.twostage
Fits Clayton-Oakes or bivariate Plackett (OR) models for...
biprobit
Bivariate Probit model
blocksample
Block sampling
bptwin
Liability model for twin data
casewise
Estimates the casewise concordance based on Concordance and...
casewise.test
Estimates the casewise concordance based on Concordance and...
ClaytonOakes
Clayton-Oakes model with piece-wise constant hazards
concordance
Concordance Computes concordance and probandwise concordance
cor.cif
Cross-odds-ratio, OR or RR risk regression for competing...
Dbvn
Derivatives of the bivariate normal cumulative distribution...
dermalridges
Dermal ridges data (families)
dermalridgesMZ
Dermal ridges data (monozygotic twins)
divide.conquer
Split a data set and run function
divide.conquer.timereg
Split a data set and run function from timereg and aggregate
easy.binomial.twostage
Fits two-stage binomial for describing depdendence in...
easy.twostage
Fits two-stage model for describing depdendence in survival...
Event
Event history object
fast.approx
Fast approximation
fast.pattern
Fast pattern
fast.reshape
Fast reshape Simple reshape/tranpose of data
Grandom.cif
Additive Random effects model for competing risks data for...
internal
For internal use
ipw
Inverse Probability of Censoring Weights
lifetable.matrix
Life table
mena
Menarche data set
mets-package
Analysis of Multivariate Events
migr
Migraine data
multcif
Multivariate Cumulative Incidence Function example data set
np
np data set
phreg
Fast Cox PH regression
plack.cif
plack Computes concordance for or.cif based model, that is...
printcasewisetest
prints Concordance test
prt
Prostate data set
random.cif
Random effects model for competing risks data
simAalenFrailty
Simulate from the Aalen Frailty model
simClaytonOakes
Simulate from the Clayton-Oakes frailty model
simClaytonOakesWei
Simulate from the Clayton-Oakes frailty model
summary.cor
Summary for dependence models for competing risks
test.conc
Concordance test Compares two concordance estimates
twinbmi
BMI data set
twin.clustertrunc
Estimation of twostage model with cluster truncation in...
twinlm
Classic twin model for quantitative traits
twinsim
Simulate twin data
twinstut
Stutter data set
twostage
Fits Clayton-Oakes or bivariate Plackett models for bivariate...

Files in this package

mets/DESCRIPTION
mets/NAMESPACE
mets/NEWS
mets/R
mets/R/Dbvn.R
mets/R/RcppExports.R
mets/R/aalenfrailty.R
mets/R/bicomprisk.R
mets/R/bicomprisksim.R
mets/R/binomial.twostage.R
mets/R/biprobit.R
mets/R/biprobit.strata.R
mets/R/biprobit.time.R
mets/R/blocksample.R
mets/R/bptwin.R
mets/R/bptwin2.R
mets/R/casewise.R
mets/R/claytonakes.R
mets/R/clusterindex-reshape.R
mets/R/coef.biprobit.R
mets/R/cor.R
mets/R/cumh.R
mets/R/divide.conquer.R
mets/R/event.R
mets/R/fastapprox.R
mets/R/fastpattern.R
mets/R/fastreshape.R
mets/R/ipw.R
mets/R/jumptimes.R
mets/R/lifetable.R
mets/R/logLik.biprobit.R
mets/R/methodstwinlm.R
mets/R/mets-package.R
mets/R/newbptwin.R
mets/R/normal0.R
mets/R/npc.R
mets/R/onload.R
mets/R/phreg.R
mets/R/phreg.par.R
mets/R/plot.bptwin.R
mets/R/plotcr.R
mets/R/pmvn.R
mets/R/predict.biprobit.R
mets/R/print.biprobit.R
mets/R/print.summary.biprobit.R
mets/R/procformula.R
mets/R/prop-odds.R
mets/R/score.biprobit.R
mets/R/sim-nordic-twin.R
mets/R/sim.bptwin.R
mets/R/sim.clayton.oakes.R
mets/R/summary.biprobit.R
mets/R/summary.bptwin.R
mets/R/surv.boxarea.R
mets/R/tetrachor.R
mets/R/twin.clustertrunc.r
mets/R/twinlm.R
mets/R/twinlm.time.R
mets/R/twinlm2.R
mets/R/twinsim.R
mets/R/twostage.R
mets/R/uniprobit.R
mets/R/utils.R
mets/R/vcov.biprobit.R
mets/data
mets/data/datalist
mets/data/dermalridges.rda
mets/data/dermalridgesMZ.rda
mets/data/mena.rda
mets/data/migr.txt.xz
mets/data/multcif.txt.xz
mets/data/np.txt.xz
mets/data/prt.rda
mets/data/twinbmi.txt.xz
mets/data/twinstut.txt.xz
mets/demo
mets/demo/00Index
mets/demo/mets.R
mets/demo/models.R
mets/demo/tools.R
mets/inst
mets/inst/binfam.rda
mets/inst/binomialtwostage.R
mets/inst/menalong.rda
mets/inst/misc
mets/inst/misc/casewisea.png
mets/inst/misc/cif2.png
mets/inst/misc/cifMZ.png
mets/inst/misc/conc2.png
mets/inst/misc/concordance.png
mets/inst/misc/cumh.png
mets/inst/misc/ipw.png
mets/inst/misc/mena.html
mets/inst/misc/obs
mets/inst/misc/obs/workshop-ts.R
mets/inst/misc/obs/workshop.R
mets/inst/misc/obs/workshop.html
mets/inst/misc/obs/workshop.org
mets/inst/misc/orgmode1.css
mets/inst/misc/orgmode2.css
mets/inst/misc/pcif.png
mets/inst/misc/pcif2.png
mets/inst/misc/pcifl.png
mets/inst/misc/run-all.R
mets/inst/misc/sim-cens-ts.r
mets/inst/misc/sim-nordic-twin.r
mets/inst/misc/twinbmi.R
mets/inst/misc/workshop-run.html
mets/inst/misc/workshop-src.org
mets/inst/misc/workshop.html
mets/inst/phenotype1.rda
mets/inst/twinbmi2.rda
mets/man
mets/man/ClaytonOakes.Rd
mets/man/Dbvn.Rd
mets/man/Event.Rd
mets/man/Grandom.cif.Rd
mets/man/aalenfrailty.Rd
mets/man/back2timereg.Rd
mets/man/bicomprisk.Rd
mets/man/binomial.twostage.Rd
mets/man/biprobit.Rd
mets/man/blocksample.Rd
mets/man/bptwin.Rd
mets/man/casewise.Rd
mets/man/casewise.test.Rd
mets/man/concordance.Rd
mets/man/cor.cif.Rd
mets/man/dermalridges.Rd
mets/man/dermalridgesMZ.Rd
mets/man/divide.conquer.Rd
mets/man/divide.conquer.timereg.Rd
mets/man/easy.binomial.twostage.Rd
mets/man/easy.twostage.Rd
mets/man/fast.approx.Rd
mets/man/fast.pattern.Rd
mets/man/fast.reshape.Rd
mets/man/internal.Rd
mets/man/ipw.Rd
mets/man/lifetable.matrix.Rd
mets/man/mena.Rd
mets/man/mets-package.Rd
mets/man/migr.Rd
mets/man/multcif.Rd
mets/man/np.Rd
mets/man/phreg.Rd
mets/man/plack.cif.Rd
mets/man/printcasewisetest.Rd
mets/man/prt.Rd
mets/man/random.cif.Rd
mets/man/simAalenFrailty.Rd
mets/man/simClaytonOakes.Rd
mets/man/simClaytonOakesWei.Rd
mets/man/summary.cor.Rd
mets/man/test.conc.Rd
mets/man/twin.clustertrunc.Rd
mets/man/twinbmi.Rd
mets/man/twinlm.Rd
mets/man/twinsim.Rd
mets/man/twinstut.Rd
mets/man/twostage.Rd
mets/src
mets/src/Makevars
mets/src/Makevars.win
mets/src/RcppExports.cpp
mets/src/aalenfrailty.cpp
mets/src/binomial-plackett.cpp
mets/src/biprobit.cpp
mets/src/claytonoakes.cpp
mets/src/clusterindex.cpp
mets/src/cor.cpp
mets/src/fastcox.cpp
mets/src/fastcox.h
mets/src/mvn.cpp
mets/src/mvn.h
mets/src/mvt.f
mets/src/plackettMLE.cpp
mets/src/prop-odd.cpp
mets/src/randomF77.c
mets/src/tools.cpp
mets/src/tools.h
mets/src/tvpack.f
mets/src/tvpackAux.c
mets/tests
mets/tests/test-all.R
mets/tests/testthat
mets/tests/testthat/test_approx.R
mets/tests/testthat/test_claytonoakes.R
mets/tests/testthat/test_reshape.R