mets: Analysis of Multivariate Event Times

Implementation of various statistical models for multivariate event history data. Including multivariate cumulative incidence models, and bivariate random effects probit models (Liability models). Also contains two-stage binomial modelling that can do pairwise odds-ratio dependence modelling based marginal logistic regression models. This is an alternative to the alternating logistic regression approach (ALR).

AuthorKlaus K. Holst and Thomas Scheike
Date of publication2014-12-15 09:18:41
MaintainerKlaus K. Holst <klaus@holst.it>
LicenseGPL (>=2)
Version1.0.1
http://lava.r-forge.r-project.org/

View on R-Forge

Man pages

aalenfrailty: Aalen frailty model

back2timereg: Convert to timereg object

bicomprisk: Estimation of concordance in bivariate competing risks data

binomial.twostage: Fits Clayton-Oakes or bivariate Plackett (OR) models for...

biprobit: Bivariate Probit model

blocksample: Block sampling

bptwin: Liability model for twin data

casewise: Estimates the casewise concordance based on Concordance and...

casewise.test: Estimates the casewise concordance based on Concordance and...

ClaytonOakes: Clayton-Oakes model with piece-wise constant hazards

concordance: Concordance Computes concordance and probandwise concordance

cor.cif: Cross-odds-ratio, OR or RR risk regression for competing...

Dbvn: Derivatives of the bivariate normal cumulative distribution...

dermalridges: Dermal ridges data (families)

dermalridgesMZ: Dermal ridges data (monozygotic twins)

divide.conquer: Split a data set and run function

divide.conquer.timereg: Split a data set and run function from timereg and aggregate

easy.binomial.twostage: Fits two-stage binomial for describing depdendence in...

easy.twostage: Fits two-stage model for describing depdendence in survival...

Event: Event history object

fast.approx: Fast approximation

fast.pattern: Fast pattern

fast.reshape: Fast reshape Simple reshape/tranpose of data

Grandom.cif: Additive Random effects model for competing risks data for...

internal: For internal use

ipw: Inverse Probability of Censoring Weights

lifetable.matrix: Life table

mena: Menarche data set

mets-package: Analysis of Multivariate Events

migr: Migraine data

multcif: Multivariate Cumulative Incidence Function example data set

np: np data set

phreg: Fast Cox PH regression

plack.cif: plack Computes concordance for or.cif based model, that is...

printcasewisetest: prints Concordance test

prt: Prostate data set

random.cif: Random effects model for competing risks data

simAalenFrailty: Simulate from the Aalen Frailty model

simClaytonOakes: Simulate from the Clayton-Oakes frailty model

simClaytonOakesWei: Simulate from the Clayton-Oakes frailty model

summary.cor: Summary for dependence models for competing risks

test.conc: Concordance test Compares two concordance estimates

twinbmi: BMI data set

twin.clustertrunc: Estimation of twostage model with cluster truncation in...

twinlm: Classic twin model for quantitative traits

twinsim: Simulate twin data

twinstut: Stutter data set

twostage: Fits Clayton-Oakes or bivariate Plackett models for bivariate...

Functions

aalenfrailty Man page
alpha2kendall Man page
alpha2spear Man page
back2timereg Man page
bicomprisk Man page
binomial.twostage Man page
binomial.twostage.time Man page
biprobit Man page
biprobit.time Man page
biprobit.vector Man page
blocksample Man page
bptwin Man page
bptwin.time Man page
casewise Man page
casewise.bin Man page
casewise.test Man page
ClaytonOakes Man page
cluster.index Man page
coefmat Man page
concordance Man page
cor.cif Man page
corsim.prostate Man page
Dbvn Man page
dermalridges Man page
dermalridgesMZ Man page
divide.conquer Man page
divide.conquer.timereg Man page
easy.binomial.twostage Man page
easy.twostage Man page
Event Man page
familycluster.index Man page
fast.approx Man page
faster.reshape Man page
fast.pattern Man page
fast.reshape Man page
folds Man page
Grandom.cif Man page
grouptable Man page
ipw Man page
jumptimes Man page
lifetable Man page
lifetable.formula Man page
lifetable.matrix Man page
loglikMVN Man page
mena Man page
mets-package Man page
migr Man page
multcif Man page
nonparcuminc Man page
np Man page
npc Man page
or2prob Man page
or.cif Man page
pbvn Man page
phreg Man page
phreg.par Man page
piecewise.data Man page
piecewise.twostage Man page
plack.cif Man page
plack.cif2 Man page
plotcr Man page
pmvn Man page
printcasewisetest Man page
prt Man page
random.cif Man page
rbind.Event Man page
rr.cif Man page
sim Man page
simAalenFrailty Man page
simBinFam Man page
simBinFam2 Man page
simBinPlack Man page
simClaytonOakes Man page
simClaytonOakesWei Man page
simCox Man page
simnordic Man page
simSurvFam Man page
slope.process Man page
summary.cor Man page
surv.boxarea Man page
test.conc Man page
tetrachoric Man page
twinbmi Man page
twin.clustertrunc Man page
twinlm Man page
twinlm.strata Man page
twinlm.time Man page
twinsim Man page
twinstut Man page
twostage Man page

Files

mets/DESCRIPTION
mets/NAMESPACE
mets/NEWS
mets/R
mets/R/Dbvn.R mets/R/RcppExports.R mets/R/aalenfrailty.R mets/R/bicomprisk.R mets/R/bicomprisksim.R mets/R/binomial.twostage.R mets/R/biprobit.R mets/R/biprobit.strata.R mets/R/biprobit.time.R mets/R/blocksample.R mets/R/bptwin.R mets/R/bptwin2.R mets/R/casewise.R mets/R/claytonakes.R mets/R/clusterindex-reshape.R mets/R/coef.biprobit.R mets/R/cor.R mets/R/cumh.R mets/R/divide.conquer.R mets/R/event.R mets/R/fastapprox.R mets/R/fastpattern.R mets/R/fastreshape.R mets/R/ipw.R mets/R/jumptimes.R mets/R/lifetable.R mets/R/logLik.biprobit.R mets/R/methodstwinlm.R mets/R/mets-package.R mets/R/newbptwin.R mets/R/normal0.R mets/R/npc.R mets/R/onload.R mets/R/phreg.R mets/R/phreg.par.R mets/R/plot.bptwin.R mets/R/plotcr.R mets/R/pmvn.R mets/R/predict.biprobit.R mets/R/print.biprobit.R mets/R/print.summary.biprobit.R mets/R/procformula.R mets/R/prop-odds.R mets/R/score.biprobit.R mets/R/sim-nordic-twin.R mets/R/sim.bptwin.R mets/R/sim.clayton.oakes.R mets/R/summary.biprobit.R mets/R/summary.bptwin.R mets/R/surv.boxarea.R mets/R/tetrachor.R
mets/R/twin.clustertrunc.r
mets/R/twinlm.R mets/R/twinlm.time.R mets/R/twinlm2.R mets/R/twinsim.R mets/R/twostage.R mets/R/uniprobit.R mets/R/utils.R mets/R/vcov.biprobit.R
mets/data
mets/data/datalist
mets/data/dermalridges.rda
mets/data/dermalridgesMZ.rda
mets/data/mena.rda
mets/data/migr.txt.xz
mets/data/multcif.txt.xz
mets/data/np.txt.xz
mets/data/prt.rda
mets/data/twinbmi.txt.xz
mets/data/twinstut.txt.xz
mets/demo
mets/demo/00Index
mets/demo/mets.R
mets/demo/models.R
mets/demo/tools.R
mets/inst
mets/inst/binfam.rda
mets/inst/binomialtwostage.R
mets/inst/menalong.rda
mets/inst/misc
mets/inst/misc/casewisea.png
mets/inst/misc/cif2.png
mets/inst/misc/cifMZ.png
mets/inst/misc/conc2.png
mets/inst/misc/concordance.png
mets/inst/misc/cumh.png
mets/inst/misc/ipw.png
mets/inst/misc/mena.html
mets/inst/misc/obs
mets/inst/misc/obs/workshop-ts.R
mets/inst/misc/obs/workshop.R
mets/inst/misc/obs/workshop.html
mets/inst/misc/obs/workshop.org
mets/inst/misc/orgmode1.css
mets/inst/misc/orgmode2.css
mets/inst/misc/pcif.png
mets/inst/misc/pcif2.png
mets/inst/misc/pcifl.png
mets/inst/misc/run-all.R
mets/inst/misc/sim-cens-ts.r
mets/inst/misc/sim-nordic-twin.r
mets/inst/misc/twinbmi.R
mets/inst/misc/workshop-run.html
mets/inst/misc/workshop-src.org
mets/inst/misc/workshop.html
mets/inst/phenotype1.rda
mets/inst/twinbmi2.rda
mets/man
mets/man/ClaytonOakes.Rd mets/man/Dbvn.Rd mets/man/Event.Rd mets/man/Grandom.cif.Rd mets/man/aalenfrailty.Rd mets/man/back2timereg.Rd mets/man/bicomprisk.Rd mets/man/binomial.twostage.Rd mets/man/biprobit.Rd mets/man/blocksample.Rd mets/man/bptwin.Rd mets/man/casewise.Rd mets/man/casewise.test.Rd mets/man/concordance.Rd mets/man/cor.cif.Rd mets/man/dermalridges.Rd mets/man/dermalridgesMZ.Rd mets/man/divide.conquer.Rd mets/man/divide.conquer.timereg.Rd mets/man/easy.binomial.twostage.Rd mets/man/easy.twostage.Rd mets/man/fast.approx.Rd mets/man/fast.pattern.Rd mets/man/fast.reshape.Rd mets/man/internal.Rd mets/man/ipw.Rd mets/man/lifetable.matrix.Rd mets/man/mena.Rd mets/man/mets-package.Rd mets/man/migr.Rd mets/man/multcif.Rd mets/man/np.Rd mets/man/phreg.Rd mets/man/plack.cif.Rd mets/man/printcasewisetest.Rd mets/man/prt.Rd mets/man/random.cif.Rd mets/man/simAalenFrailty.Rd mets/man/simClaytonOakes.Rd mets/man/simClaytonOakesWei.Rd mets/man/summary.cor.Rd mets/man/test.conc.Rd mets/man/twin.clustertrunc.Rd mets/man/twinbmi.Rd mets/man/twinlm.Rd mets/man/twinsim.Rd mets/man/twinstut.Rd mets/man/twostage.Rd
mets/src
mets/src/Makevars
mets/src/Makevars.win
mets/src/RcppExports.cpp
mets/src/aalenfrailty.cpp
mets/src/binomial-plackett.cpp
mets/src/biprobit.cpp
mets/src/claytonoakes.cpp
mets/src/clusterindex.cpp
mets/src/cor.cpp
mets/src/fastcox.cpp
mets/src/fastcox.h
mets/src/mvn.cpp
mets/src/mvn.h
mets/src/mvt.f
mets/src/plackettMLE.cpp
mets/src/prop-odd.cpp
mets/src/randomF77.c
mets/src/tools.cpp
mets/src/tools.h
mets/src/tvpack.f
mets/src/tvpackAux.c
mets/tests
mets/tests/test-all.R
mets/tests/testthat
mets/tests/testthat/test_approx.R
mets/tests/testthat/test_claytonoakes.R
mets/tests/testthat/test_reshape.R

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