plot.mi: Diagnostic Plots for multiple imputation object

In mi: Missing Data Imputation and Model Checking

Description

Diagnostic plots for testing the fit of the imputation method to the observed data.

Usage

## S4 method for signature 'mi,ANY'
plot(x, y, ...)

plot.mi(x, y, m = 1, vrb = NULL, vrb.name = "Variable Score",
                    gray.scale = FALSE, mfrow=c( 1, 3 ), ... )

Arguments

x	mi object generated by the mi function.
y	currently not used.
...	Arguments for other methods, not used.
m	The m-th imputation. By default is 1.
vrb	A chosen variable for the scatter plot.
vrb.name	A name of the vrb variable.
gray.scale	When set to TRUE, makes the plot into gray scale with predefined color and line type.
mfrow	See “par” for details.

Details

For each variable, observed values are in blue, the imputed values are in red. In the scatterplot the observed and the imputed are plotted versus a variable the users can choose. By default the values are plotted against an index number but it strongly recommended to use a variable containing more information. Fitted lowess lines are also plotted for both observed and imputed data. A small amount of random noise (jittering) is added to the points so that they do not fall on top of each other.

Value

Histograms, scatterplots, and residual plots of the fit of the imputation models. Binned residual plots are for each binary variable.

Author(s)

Masanao Yajima [e-mail], Yu-Sung Su [e-mail], M.Grazia Pittau [e-mail], Andrew Gelman [e-mail]

References

Yu-Sung Su, Andrew Gelman, Jennifer Hill, Masanao Yajima. (2011). “Multiple Imputation with Diagnostics (mi) in R: Opening Windows into the Black Box”. Journal of Statistical Software 45(2).

Kobi Abayomi, Andrew Gelman and Marc Levy. (2008). “Diagnostics for multivariate imputations”. Applied Statistics 57, Part 3: 273–291.

Andrew Gelman and Jennifer Hill. (2007). Data Analysis Using Regression and Multilevel/Hierarchical Models. Cambridge University Press.

See Also

mi, mi.scatterplot, mi.hist

Examples

### NOT RUN
#========================================================
#  data(CHAIN)
#  imp.CHAIN <- mi(CHAIN, n.iter=6, add.noise=FALSE)
#  plot(imp.CHAIN)
#========================================================

Example output

Loading required package: Matrix
Loading required package: stats4
mi (Version 1.0, packaged: 2015-04-16 14:03:10 UTC; goodrich)
mi  Copyright (C) 2008, 2009, 2010, 2011, 2012, 2013, 2014, 2015 Trustees of Columbia University
This program comes with ABSOLUTELY NO WARRANTY.
This is free software, and you are welcome to redistribute it
under the General Public License version 2 or later.
Execute RShowDoc('COPYING') for details.

mi documentation built on May 2, 2019, 4:43 p.m.