Parameters of fitted twophase models, in mixture model parameterisation.
1 2  phasemeans.msm(x, covariates="mean", ci=c("none","normal","bootstrap"),
cl=0.95, B=1000, cores=NULL)

x 
A fitted multistate model, as returned by 
covariates 
Covariate values, see 
ci 
If 
cl 
Width of the symmetric confidence interval, relative to 1. 
B 
Number of bootstrap replicates, or number of normal simulations from the distribution of the MLEs. 
cores 
Number of cores to use for bootstrapping using parallel
processing. See 
Matrix with one row for each state that has a twophase distribution,
and three columns: the shortstay mean, longstay mean and longstay
probability. These are functions of the transition intensities of the
expanded hidden Markov model, defined in d2phase
.
C. H. Jackson chris.jackson@mrcbsu.cam.ac.uk
d2phase
.
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