mutrank.wrap: Mutual Rank wrapper function

In netbenchmark: Benchmarking of several gene network inference methods

Description

A wrapper function for mutual rank.

Usage

    mutrank.wrap(data)

Arguments

data	Numeric matrix with the microarray dataset to infer the network. Columns contain variables and rows contain samples.

Value

mutrank.wrap returns a matrix which is the weighted adjacency matrix of the network inferred by Mutual Rank algorithm.

References

Obayashi, Takeshi, and Kengo Kinoshita. "Rank of correlation coefficient as a comparable measure for biological significance of gene coexpression." DNA research 16.5 (2009): 249-260.

Examples

    # Data
    data <- runif(100)
    dim(data) <- c(10,10)
    # Inference
    net <- mutrank.wrap(as.data.frame(data))

Example output

Loading required package: grndata

netbenchmark documentation built on May 2, 2019, 6:08 p.m.