loci.over.time: Allele frequency time series plots

In nicholsonppp: Evolution simulation and classification

Description

Plot allele frequency evolution over time for each locus, grouping by population color. This shows the difference between selection types and population colors.

Usage

loci.over.time(fr, pop.colors = pop.colors.default, generation = NULL, m = "Allele frequency evolution varies with selection type and population color", popsize.enc = NULL)

Arguments

fr	Data frame of simulated allele frequencies.
pop.colors	Colors to use to distinguish populations (blue, neutral, red)
generation	Generation to emphasize, or NULL for no emphasis.
m	Main title.
popsize.enc	Aesthetic to encode population size. lty or lwd work well. NULL means do not show population size.

Value

The ggplot2 plot.

Author(s)

Toby Dylan Hocking <[e-mail]>

Examples

library(nicholsonppp)
sim <- sim.drift.selection(s=0.5,generations=100)
df <- sim2df(sim)
df.i <- interesting.loci(df)
stopifnot(nrow(df.i)/nrow(df)*sim$p$n.locus==6)
loci.over.time(df.i)

nicholsonppp documentation built on May 2, 2019, 5:55 p.m.