fixation.endpoints: Plot allele frequency by selection type

In nicholsonppp: Evolution simulation and classification

Description

Plot gene frequencies for all loci and populations for a given generation, stratified by selection type and coefficient.

Usage

fixation.endpoints(lf, main = "Loci fixation depends on selection type and population color", pop.colors = c(pop.colors.default, "black"), par.settings = list(superpose.symbol = list(col = pop.colors, pch = 20)), hilite.locus = NULL, selection.colors = selection.colors.default, sub = deduce.param.label(attr(lf, "parameters")), ...)

Arguments

lf	Subset of simulated gene frequency data frame, with just 1 generation.
main	Plot title.
pop.colors	Population color scheme (blue, neutral, red, ancestral).
par.settings	Plot settings as described in trellis.par.get.
hilite.locus	Locus to highlight with a vertical line, or NULL to highlight nothing.
selection.colors	List with element "col" which contains a vector of colors to label the selection types (balancing, none, positive)
sub	Subtitle for the plot.
...

Value

The lattice plot.

Author(s)

Toby Dylan Hocking <[e-mail]>

Examples

library(nicholsonppp)
sim <- sim.drift.selection()
df <- sim2df(sim)
fixation.endpoints(df[df$generation==sim$p$gen,])

nicholsonppp documentation built on May 2, 2019, 5:55 p.m.