nlcv: Nested Loop Cross Validation

Nested loop cross validation for classification purposes

AuthorWillem Talloen, Tobias Verbeke
Date of publication2012-03-23 22:31:47
MaintainerTobias Verbeke <tobias.verbeke@openanalytics.eu>
LicenseGPL-3
Version0.2-2

View on R-Forge

Functions

classify Man page
confusionMatrix.nlcv Man page
inTrainingSample Man page
limmaTwoGroups Man page
mcrPlot Man page
nlcv Man page
nlcvRF_R Man page
nlcvRF_SHS Man page
nlcvRF_SS Man page
nlcvRF_WHS Man page
nlcvRF_WS Man page
nlcvTT_R Man page
nlcvTT_SHS Man page
nlcvTT_SS Man page
nlcvTT_WHS Man page
nlcvTT_WS Man page
nldaI Man page
pamrI Man page
pamrML Man page
pamrTrain Man page
predict.pamrML Man page
print.nlcvConfusionMatrix Man page
print.pamrML Man page
print.summary.mcrPlot Man page
rankDistributionPlot Man page
rocPlot Man page
scoresPlot Man page
summary.mcrPlot Man page
topTable Man page
topTable-methods Man page
topTable,nlcv-method Man page
xtable.confusionMatrix Man page
xtable.summary.mcrPlot Man page

Files

nlcv
nlcv/data
nlcv/data/datalist
nlcv/data/nlcvRF_WS.rda
nlcv/data/nlcvRF_WHS.rda
nlcv/data/nlcvTT_WHS.rda
nlcv/data/nlcvTT_SHS.rda
nlcv/data/nlcvTT_SS.rda
nlcv/data/nlcvRF_R.rda
nlcv/data/nlcvTT_R.rda
nlcv/data/nlcvRF_SS.rda
nlcv/data/nlcvRF_SHS.rda
nlcv/data/nlcvTT_WS.rda
nlcv/R
nlcv/R/compareOrig.R nlcv/R/topTable.R nlcv/R/confusionMatrix.R nlcv/R/nldaI.R nlcv/R/pamrI.R nlcv/R/classify.R nlcv/R/zzz.R nlcv/R/mcrPlot.R nlcv/R/classify_bioc_2.2.R nlcv/R/rankDistributionPlot.R nlcv/R/xtable.confusionMatrix.R nlcv/R/xtable.summary.mcrPlot.R nlcv/R/limma.R nlcv/R/inTrainingSample.R nlcv/R/scoresPlot.R nlcv/R/rocPlot.R nlcv/R/nlcv.R nlcv/R/classify_bioc_2.3.R
nlcv/NAMESPACE
nlcv/tests
nlcv/tests/test.scoresPlot.R
nlcv/tests/test.MLInterfaces.R
nlcv/tests/test.mcrPlot.R
nlcv/inst
nlcv/inst/unitTests
nlcv/inst/unitTests/runTests.R
nlcv/inst/unitTests/runit.nlcv.R
nlcv/inst/unitTests/Makefile
nlcv/inst/generateData.R
nlcv/inst/TODO
nlcv/inst/doc
nlcv/inst/doc/vignetteNLCV.bib
nlcv/inst/doc/nlcv.pdf
nlcv/inst/doc/graphs
nlcv/inst/doc/graphs/plotGeneSS.pdf
nlcv/inst/doc/graphs/ScoresPlot_nlcv_SHS3.pdf
nlcv/inst/doc/graphs/mcrPlot_nlcv_SS.pdf
nlcv/inst/doc/graphs/mcrPlot_nlcv_R.pdf
nlcv/inst/doc/graphs/ScoresPlot_nlcv_WHS2.pdf
nlcv/inst/doc/graphs/ScoresPlot_nlcv_WHS.pdf
nlcv/inst/doc/graphs/mcrPlot_nlcv_SHS.pdf
nlcv/inst/doc/graphs/ScoresPlot_nlcv_R.pdf
nlcv/inst/doc/graphs/mcrPlot_nlcv_SHS_3C_5R.pdf
nlcv/inst/doc/graphs/mcrPlot_nlcv_WS.pdf
nlcv/inst/doc/graphs/ScoresPlot_nlcv_SHS.pdf
nlcv/inst/doc/graphs/plotGeneWS.pdf
nlcv/inst/doc/graphs/plotGeneSHS.pdf
nlcv/inst/doc/graphs/ScoresPlot_nlcv_WHS3.pdf
nlcv/inst/doc/graphs/ScoresPlot_nlcv_SHS_3C_5R.pdf
nlcv/inst/doc/graphs/ScoresPlot_nlcv_WHS0.pdf
nlcv/inst/doc/graphs/ScoresPlot_nlcv_SHS_5C_5R.pdf
nlcv/inst/doc/graphs/ScoresPlot_nlcv_SS.pdf
nlcv/inst/doc/graphs/ScoresPlot_nlcv_WS.pdf
nlcv/inst/doc/graphs/Ranking_NL.pdf
nlcv/inst/doc/graphs/mcrPlot_nlcv_SHS_5C_5R.pdf
nlcv/inst/doc/graphs/NestedLoop.pdf
nlcv/inst/doc/graphs/mcrPlot_nlcv_WHS.pdf
nlcv/inst/doc/graphs/plotGeneWHS.pdf
nlcv/inst/doc/graphs/ScoresPlot_nlcv_SHS2.pdf
nlcv/inst/doc/nlcv.Rnw
nlcv/inst/NEWS
nlcv/DESCRIPTION
nlcv/man
nlcv/man/confusionMatrix.Rd nlcv/man/pamrI.Rd nlcv/man/xtable.summary.mcrPlot.Rd nlcv/man/mcrPlot.Rd nlcv/man/topTable-methods.Rd nlcv/man/classify.Rd nlcv/man/rocPlot.Rd nlcv/man/scoresPlot.Rd nlcv/man/xtable.confusionMatrix.Rd nlcv/man/nldaI.Rd nlcv/man/nlcvData.Rd nlcv/man/pamrTrain.Rd nlcv/man/nlcv.Rd nlcv/man/pamrML.Rd nlcv/man/rankDistributionPlot.Rd nlcv/man/inTrainingSample.Rd nlcv/man/limmaTwoGroups.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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