nlcv: Nested Loop Cross Validation

Nested loop cross validation for classification purposes

AuthorWillem Talloen, Tobias Verbeke
Date of publication2012-03-23 22:31:47
MaintainerTobias Verbeke <tobias.verbeke@openanalytics.eu>
LicenseGPL-3
Version0.2-2

View on R-Forge

Functions

classify Man page
confusionMatrix.nlcv Man page
inTrainingSample Man page
limmaTwoGroups Man page
mcrPlot Man page
nlcv Man page
nlcvRF_R Man page
nlcvRF_SHS Man page
nlcvRF_SS Man page
nlcvRF_WHS Man page
nlcvRF_WS Man page
nlcvTT_R Man page
nlcvTT_SHS Man page
nlcvTT_SS Man page
nlcvTT_WHS Man page
nlcvTT_WS Man page
nldaI Man page
pamrI Man page
pamrML Man page
pamrTrain Man page
predict.pamrML Man page
print.nlcvConfusionMatrix Man page
print.pamrML Man page
print.summary.mcrPlot Man page
rankDistributionPlot Man page
rocPlot Man page
scoresPlot Man page
summary.mcrPlot Man page
topTable Man page
topTable-methods Man page
topTable,nlcv-method Man page
xtable.confusionMatrix Man page
xtable.summary.mcrPlot Man page

Files

data
data/datalist
data/nlcvRF_WS.rda
data/nlcvRF_WHS.rda
data/nlcvTT_WHS.rda
data/nlcvTT_SHS.rda
data/nlcvTT_SS.rda
data/nlcvRF_R.rda
data/nlcvTT_R.rda
data/nlcvRF_SS.rda
data/nlcvRF_SHS.rda
data/nlcvTT_WS.rda
R
R/compareOrig.R R/topTable.R R/confusionMatrix.R R/nldaI.R R/pamrI.R R/classify.R R/zzz.R R/mcrPlot.R R/classify_bioc_2.2.R R/rankDistributionPlot.R R/xtable.confusionMatrix.R R/xtable.summary.mcrPlot.R R/limma.R R/inTrainingSample.R R/scoresPlot.R R/rocPlot.R R/nlcv.R R/classify_bioc_2.3.R
NAMESPACE
tests
tests/test.scoresPlot.R tests/test.MLInterfaces.R tests/test.mcrPlot.R
inst
inst/unitTests
inst/unitTests/runTests.R inst/unitTests/runit.nlcv.R
inst/unitTests/Makefile
inst/generateData.R
inst/TODO
inst/doc
inst/doc/vignetteNLCV.bib
inst/doc/nlcv.pdf
inst/doc/graphs
inst/doc/graphs/plotGeneSS.pdf
inst/doc/graphs/ScoresPlot_nlcv_SHS3.pdf
inst/doc/graphs/mcrPlot_nlcv_SS.pdf
inst/doc/graphs/mcrPlot_nlcv_R.pdf
inst/doc/graphs/ScoresPlot_nlcv_WHS2.pdf
inst/doc/graphs/ScoresPlot_nlcv_WHS.pdf
inst/doc/graphs/mcrPlot_nlcv_SHS.pdf
inst/doc/graphs/ScoresPlot_nlcv_R.pdf
inst/doc/graphs/mcrPlot_nlcv_SHS_3C_5R.pdf
inst/doc/graphs/mcrPlot_nlcv_WS.pdf
inst/doc/graphs/ScoresPlot_nlcv_SHS.pdf
inst/doc/graphs/plotGeneWS.pdf
inst/doc/graphs/plotGeneSHS.pdf
inst/doc/graphs/ScoresPlot_nlcv_WHS3.pdf
inst/doc/graphs/ScoresPlot_nlcv_SHS_3C_5R.pdf
inst/doc/graphs/ScoresPlot_nlcv_WHS0.pdf
inst/doc/graphs/ScoresPlot_nlcv_SHS_5C_5R.pdf
inst/doc/graphs/ScoresPlot_nlcv_SS.pdf
inst/doc/graphs/ScoresPlot_nlcv_WS.pdf
inst/doc/graphs/Ranking_NL.pdf
inst/doc/graphs/mcrPlot_nlcv_SHS_5C_5R.pdf
inst/doc/graphs/NestedLoop.pdf
inst/doc/graphs/mcrPlot_nlcv_WHS.pdf
inst/doc/graphs/plotGeneWHS.pdf
inst/doc/graphs/ScoresPlot_nlcv_SHS2.pdf
inst/doc/nlcv.Rnw
inst/NEWS
DESCRIPTION
man
man/confusionMatrix.Rd man/pamrI.Rd man/xtable.summary.mcrPlot.Rd man/mcrPlot.Rd man/topTable-methods.Rd man/classify.Rd man/rocPlot.Rd man/scoresPlot.Rd man/xtable.confusionMatrix.Rd man/nldaI.Rd man/nlcvData.Rd man/pamrTrain.Rd man/nlcv.Rd man/pamrML.Rd man/rankDistributionPlot.Rd man/inTrainingSample.Rd man/limmaTwoGroups.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.