patchwork: Allele-specific Copy Number Analysis of whole genome data

Performs a allele-specific copy number analysis of whole genome data.

AuthorMarkus Mayrhofer, Sebastian DiLorenzo
Date of publication2014-09-04 12:07:32
MaintainerMarkus Mayrhofer <Markus.Mayrhofer@medsci.uu.se>
LicenseGPL-2
Version2.4

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Files in this package

patchwork/DESCRIPTION
patchwork/NAMESPACE
patchwork/R
patchwork/R/karyotype.r
patchwork/R/karyotype_check.r
patchwork/R/karyotype_chroms.r
patchwork/R/karyotype_chromsCN.r
patchwork/R/patchwork.GCNorm.r
patchwork/R/patchwork.Medians_n_AI.r
patchwork/R/patchwork.alleledata.r
patchwork/R/patchwork.applyref.r
patchwork/R/patchwork.copynumbers.r
patchwork/R/patchwork.createreference.r
patchwork/R/patchwork.plot.r
patchwork/R/patchwork.readChroms.r
patchwork/R/patchwork.region.r
patchwork/R/patchwork.segment.r
patchwork/R/patchwork.smoothing.r
patchwork/R/subfunctions_copynumbers.r
patchwork/R/sysdata.rda
patchwork/R/zzz.R
patchwork/inst
patchwork/inst/README
patchwork/inst/perl
patchwork/inst/perl/mpile2alleles.pl
patchwork/inst/perl/pile2alleles.pl
patchwork/inst/python
patchwork/inst/python/Pysamloader.py
patchwork/man
patchwork/man/karyotype.Rd patchwork/man/karyotype_check.Rd patchwork/man/karyotype_chroms.Rd patchwork/man/karyotype_chromsCN.Rd patchwork/man/patchwork.GCNorm.Rd patchwork/man/patchwork.Medians_n_AI.Rd patchwork/man/patchwork.alleledata.Rd patchwork/man/patchwork.applyref.Rd patchwork/man/patchwork.copynumbers.Rd patchwork/man/patchwork.createreference.Rd patchwork/man/patchwork.plot.Rd patchwork/man/patchwork.readChroms.Rd patchwork/man/patchwork.region.Rd patchwork/man/patchwork.segment.Rd patchwork/man/patchwork.smoothing.Rd patchwork/man/subfunctions_copynumbers.Rd patchwork/man/zzz.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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