patchwork: Allele-specific Copy Number Analysis of whole genome data

Performs a allele-specific copy number analysis of whole genome data.

AuthorMarkus Mayrhofer, Sebastian DiLorenzo
Date of publication2014-09-04 12:07:32
MaintainerMarkus Mayrhofer <Markus.Mayrhofer@medsci.uu.se>
LicenseGPL-2
Version2.4

View on R-Forge

Functions

alleledata Man page
applyref Man page
assignAI Man page
check Man page
chromsCN Man page
chrom_ucsc Man page
copynumbers Man page
createreference Man page
deChrom_ucsc Man page
GCNorm Man page
help.patchwork Man page
is.autosome Man page
karyotype Man page
karyotype_check Man page
karyotype_chroms Man page
karyotype_chromsCN Man page
Medians_n_AI Man page
patchwork Man page
patchwork.alleledata Man page
patchwork.applyref Man page
patchwork.copynumbers Man page
patchwork.createreference Man page
patchwork.GCNorm Man page
patchwork.help Man page
patchwork.Medians_n_AI Man page
patchwork.plot Man page
patchwork.readChroms Man page
patchwork.readme Man page
patchwork.region Man page
Patchwork.Region Man page
patchwork.segment Man page
patchwork.smoothing Man page
patchwork.subfunctions_copynumbers Man page
readChroms Man page
readme.patchwork Man page
region Man page
smoothing Man page
subfunctions_copynumbers Man page
weightedMean Man page
weightedMedian Man page

Files

patchwork/DESCRIPTION
patchwork/NAMESPACE
patchwork/R
patchwork/R/karyotype.r
patchwork/R/karyotype_check.r
patchwork/R/karyotype_chroms.r
patchwork/R/karyotype_chromsCN.r
patchwork/R/patchwork.GCNorm.r
patchwork/R/patchwork.Medians_n_AI.r
patchwork/R/patchwork.alleledata.r
patchwork/R/patchwork.applyref.r
patchwork/R/patchwork.copynumbers.r
patchwork/R/patchwork.createreference.r
patchwork/R/patchwork.plot.r
patchwork/R/patchwork.readChroms.r
patchwork/R/patchwork.region.r
patchwork/R/patchwork.segment.r
patchwork/R/patchwork.smoothing.r
patchwork/R/subfunctions_copynumbers.r
patchwork/R/sysdata.rda
patchwork/R/zzz.R
patchwork/inst
patchwork/inst/README
patchwork/inst/perl
patchwork/inst/perl/mpile2alleles.pl
patchwork/inst/perl/pile2alleles.pl
patchwork/inst/python
patchwork/inst/python/Pysamloader.py
patchwork/man
patchwork/man/karyotype.Rd patchwork/man/karyotype_check.Rd patchwork/man/karyotype_chroms.Rd patchwork/man/karyotype_chromsCN.Rd patchwork/man/patchwork.GCNorm.Rd patchwork/man/patchwork.Medians_n_AI.Rd patchwork/man/patchwork.alleledata.Rd patchwork/man/patchwork.applyref.Rd patchwork/man/patchwork.copynumbers.Rd patchwork/man/patchwork.createreference.Rd patchwork/man/patchwork.plot.Rd patchwork/man/patchwork.readChroms.Rd patchwork/man/patchwork.region.Rd patchwork/man/patchwork.segment.Rd patchwork/man/patchwork.smoothing.Rd patchwork/man/subfunctions_copynumbers.Rd patchwork/man/zzz.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.