patchwork.readChroms: patchwork function to read chromosomes into R
In patchwork: Allele-specific Copy Number Analysis of whole genome data
Description
Usage
Arguments
Details
Author(s)
See Also
View source: R/patchwork.readChroms.r
Description
Internal function of patchwork.plot().
Usage
1
patchwork.readChroms(BamFile,chroms)
Arguments
BamFile
Input Bam from patchwork.plot().
chroms
chroms is an object generated from pile.alleles.RData's alf\$achr attribute.
Details
Reads GC values regarding each chromosome and attaches it to the data. Also uses the python
script "Pysamloader.py" to generate a position file for each chromosome in turn.
Author(s)
Markus Mayrhofer, markus.mayrhofer@medsci.uu.se
Sebastian DiLorenzo, sebastian.dilorenzo@medsci.uu.se
See Also
patchwork documentation built on May 2, 2019, 5:02 p.m.
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Description Usage Arguments Details Author(s) See Also
View source: R/patchwork.readChroms.r
Description
Internal function of patchwork.plot().
Usage
1 | patchwork.readChroms(BamFile,chroms)
|
Arguments
BamFile |
Input Bam from patchwork.plot(). |
chroms |
chroms is an object generated from pile.alleles.RData's alf\$achr attribute. |
Details
Reads GC values regarding each chromosome and attaches it to the data. Also uses the python script "Pysamloader.py" to generate a position file for each chromosome in turn.
Author(s)
Markus Mayrhofer, markus.mayrhofer@medsci.uu.se Sebastian DiLorenzo, sebastian.dilorenzo@medsci.uu.se
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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