patchwork.readChroms: patchwork function to read chromosomes into R

Description Usage Arguments Details Author(s) See Also

View source: R/patchwork.readChroms.r

Description

Internal function of patchwork.plot().

Usage

1
patchwork.readChroms(BamFile,chroms)

Arguments

BamFile

Input Bam from patchwork.plot().

chroms

chroms is an object generated from pile.alleles.RData's alf\$achr attribute.

Details

Reads GC values regarding each chromosome and attaches it to the data. Also uses the python script "Pysamloader.py" to generate a position file for each chromosome in turn.

Author(s)

Markus Mayrhofer, [email protected] Sebastian DiLorenzo, [email protected]

See Also

patchwork.plot


patchwork documentation built on May 31, 2017, 2:54 a.m.