patchwork.smoothing: patchwork smoothing function

In patchwork: Allele-specific Copy Number Analysis of whole genome data

Description

Applies smoothing by averaging kb segments.

Usage

patchwork.smoothing(data,normaldata=NULL,reference=NULL,chroms)

Arguments

data	data object generated after patchwork.GCNorm().
normaldata	Default is NULL, generated and used if you have supplied normal.bam to patchwork.plot.
reference	Default is NULL, used if you have supplied reference argument to patchwork.plot.
chroms	chroms is an object generated from pile.alleles.RData's alf\$achr attribute.

Author(s)

Markus Mayrhofer, [e-mail] Sebastian DiLorenzo, [e-mail]

See Also

patchwork.plot

patchwork documentation built on May 2, 2019, 5:02 p.m.