Description Usage Arguments Author(s) See Also
A number of subfunctions used within patchwork.copynumbers(). These functions are identical in patchworkCG package, so should that package be installed before patchwork or vice versa you will get a non-consequential message saying:
The following object(s) are masked from 'package:patchworkCG':
chrom_ucsc, deChrom_ucsc, is.autosome, weightedMean, weightedMedian
1 2 3 4 5 6 | weightedMedian(data,weights)
weightedMean(data,weights)
is.autosome(vector)
deChrom_ucsc(data)
chrom_ucsc(data)
assignAI(snp_chr,snp_pos,snp_min,snp_max,seg_chr,seg_start,seg_end)
|
data |
Object to be handled by the internal function. |
weights |
Weights to be applied. |
vector |
The segs objects chr column. |
snp_chr |
Chromosome. |
snp_pos |
Position. |
snp_min |
Lesser allele amount in single position. |
snp_max |
Greater allele amount in single position. |
seg_chr |
Segments chromosome. |
seg_start |
Start position of segment. |
seg_end |
End position of segment. |
Markus Mayrhofer, markus.mayrhofer@medsci.uu.se
Sebastian DiLorenzo, sebastian.dilorenzo@medsci.uu.se
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