API for rcolgem
statistical inference and modeling of genealogies generated by epidemic and ecological processes
| Global functions | |
|---|---|
| .calculate.edgemap | Source code |
| .calculate.heights | Source code |
| .calculate.internal.states | Source code |
| .calculate.internal.states.unstructuredModel | Source code |
| .end.discrete.rates | Source code |
| .extant.at.height | Source code |
| .infer.sample.states.from.annotation | Source code |
| .initialize.states | Source code |
| .start.discrete.rates | Source code |
| DatedTree | Source code |
| binaryDatedTree | Man page Source code |
| build.demographic.process | Source code |
| calculate.cluster.size.distr.from.tree | Source code |
| calculate.cluster.size.moments.from.model | Man page Source code |
| calculate.cluster.size.moments.from.tree | Man page Source code |
| coalescent.log.likelihood | Man page Source code |
| coalescent.log.likelihood.fgy | Source code |
| coalescent.log.likelihood.fgy2 | Source code |
| coalescent.log.likelihood.unstructuredModel | Source code |
| dAL | Source code |
| finite_size_correction | Source code |
| make.fgy | Source code |
| phylo.source.attribution | Man page Source code |
| pseudoLogLikelihood0.fgy | Source code |
| rescale.binaryDatedTree | Source code |
| show.demographic.process | Source code |
| sim.co.tree | Source code |
| sim.co.tree.fgy | Source code |
| simulate.binary.dated.tree | Man page Source code |
| simulate.binary.dated.tree.0 | Source code |
| simulate.binary.dated.tree.2 | Source code |
| simulate.binary.dated.tree.fgy | Source code |
| simulate.binary.dated.tree.fgy.2 | Source code |
| simulate.binary.dated.tree.unstructured | Source code |
| simulateTreeCpp2 | Source code |
| solve.model | Source code |
| solve.model.unstructured | Source code |
| updateWCpp | Source code |
| update_mstates_arma | Source code |
