Files in rcolgem
statistical inference and modeling of genealogies generated by epidemic and ecological processes
README
DESCRIPTION
NAMESPACE
inst/scripts/read_master.R
inst/doc/hiv_vignette.Rnw
inst/doc/hiv_vignette.pdf
inst/doc/hiv_simtree_vignette.Rnw
inst/doc/sir_vignette.R
inst/doc/hiv_vignette.R
inst/doc/sir_vignette.Rnw
inst/doc/sir_vignette.pdf
inst/doc/hiv_simtree_vignette.pdf
inst/doc/hiv_simtree_vignette.R
inst/extdata/hivModel0-fit.RData
inst/extdata/Ys-highSampFrac-2.tsv
inst/extdata/hAs2.csv
inst/extdata/bdtree-highSampFrac-2.nwk
inst/extdata/sirModel0.xml
inst/extdata/Y2.csv
inst/extdata/sirModel0.json
inst/extdata/F2.csv
inst/extdata/linelist-highSampFrac-2.csv
inst/extdata/hivModel0-profbeta.RData
inst/extdata/fs-highSampFrac-2.tsv
inst/extdata/sirModel0-fit.RData
inst/extdata/hivSimulation.nwk
inst/extdata/sirModel0-profbeta.RData
inst/extdata/sampleStates2.csv
inst/extdata/sirModel0.nwk
inst/extdata/deaths-highSampFrac-2.csv
inst/extdata/G2.csv
vignettes/hiv_vignette.Rnw
vignettes/hiv_simtree_vignette.Rnw
vignettes/hiv_vignette.bib
vignettes/sir_vignette.Rnw
vignettes/sir_vignette.bib
vignettes/rcolgem-manual.pdf
vignettes/figure/siiirs.pdf
vignettes/figure/sir_vignette-results0.pdf
vignettes/figure/hiv_vignette-results0.pdf
vignettes/figure/Rplots.pdf
vignettes/figure/hiv_vignette-proffigure.pdf
vignettes/figure/sir_vignette-results0plot.pdf
vignettes/figure/sir_vignette-proffigure.pdf
R/phylo.source.attribution.R
R/treeSimulatorCpp2.R
R/RcppExports.R
R/rcolgem.R
src/treeSimulatorCpp2.cpp
src/dQAL-6.3.c
src/RcppExports.cpp
src/dCA.c
src/rcolgem_helpers.cpp
src/Makevars
src/phylo.source.attribution.cpp
src/dAL0.cpp
man/simulate.binary.dated.tree.Rd
man/calculate.cluster.size.moments.from.tree.Rd
man/binaryDatedTree.Rd
man/coalescent.log.likelihood.Rd
man/calculate.cluster.size.moments.from.model.Rd
man/phylo.source.attribution.Rd
build/vignette.rds
