titanQC: QC Procedures for the GeneTitan platform

QC Procedures for the GeneTitan platform

Author
Stijn Dickens, Hinrich Göhlmann, Willem Talloen, Suzy Van Sanden, Tobias Verbeke
Date of publication
None
Maintainer
Tobias Verbeke <tobias.verbeke@openanalytics.eu>
License
GPL-3
Version
0.0-7

View on R-Forge

Man pages

boxPlate
Generate a boxplot of normalized probeset intensities for...
densityPlate
Generate for each well on the plate a density plot of the...
displayPlate
Draw a summary display for a GeneTitan plate...
getCelFilePosition
Get the position of a set of CEL files on a GeneTitan...
getPosition
Get the position on the plate for one single CEL File...
MAPlate
Generate MA plots for all individual wells on a GeneTitan...
plmPlate
Plot affyPLM QC images on a grid respecting the plate...
plot.ahullS
Patched version of the plot...
statisticPlate
Adds a statistic to the pData of the ExpressionSet object...

Files in this package

titanQC
titanQC/R
titanQC/R/getPosition.R
titanQC/R/boxPlate.R
titanQC/R/densityPlate.R
titanQC/R/displayPlate.R
titanQC/R/MAPlate.R
titanQC/R/plmPlate.R
titanQC/R/geneFiltering.R
titanQC/R/statisticPlate.R
titanQC/NAMESPACE
titanQC/inst
titanQC/inst/TODO
titanQC/inst/doc
titanQC/inst/doc/titanQC.Rnw
titanQC/inst/doc/titanQC.pdf
titanQC/inst/NEWS
titanQC/DESCRIPTION
titanQC/man
titanQC/man/getCelFilePosition.Rd
titanQC/man/statisticPlate.Rd
titanQC/man/plmPlate.Rd
titanQC/man/boxPlate.Rd
titanQC/man/plot.ahullS.Rd
titanQC/man/getPosition.Rd
titanQC/man/displayPlate.Rd
titanQC/man/densityPlate.Rd
titanQC/man/MAPlate.Rd