MAPlate: Generate MA plots for all individual wells on a GeneTitan...

In titanQC: QC Procedures for the GeneTitan platform

Description

Generate MA plots for all individual wells on a GeneTitan plate

Usage

MAPlate(eset, filePrefix="MAPlate", alpha, gradient=FALSE, title)

Arguments

eset	ExpressionSet object as produced in the 'preprocessing' function
filePrefix	prefix that will be used to generate the output files; for plate <i>, the default name will be <filePrefix>Plate<i>.png; the default file prefix is "MAPlate"
alpha	alpha value for the alphahull function (numeric of length one); when NULL (default) no contours are plotted
gradient	if TRUE a smoothscatter plot is used to depict the raw data points; if FALSE the points are plotted as is; defaults to FALSE
title	name of the variable in the pData of the eset ExpresionSet that can be used to provide titles on the individual well plots; if NULL no titles are plotted for the individual wells

Value

no return value; the function generates as many png files as there are plates contained in the ExpressionSet object 'eset'

Note

the color codes correspond to the sampleColor column of the pData of the ExpressionSet passed to argument 'eset'; if no sampleColor column is present, the data for all samples will be plotted in 'blue'

References

TODO

titanQC documentation built on May 2, 2019, 5:55 p.m.