Description Usage Arguments Value Note References
Generate MA plots for all individual wells on a GeneTitan plate
1 |
eset |
ExpressionSet object as produced in the 'preprocessing' function |
filePrefix |
prefix that will be used to generate the output files; for plate <i>, the default name will be <filePrefix>Plate<i>.png; the default file prefix is "MAPlate" |
alpha |
alpha value for the alphahull function (numeric of length one); when NULL (default) no contours are plotted |
gradient |
if TRUE a smoothscatter plot is used to depict the raw data points; if FALSE the points are plotted as is; defaults to FALSE |
title |
name of the variable in the pData of the eset ExpresionSet that can be used to provide titles on the individual well plots; if NULL no titles are plotted for the individual wells |
no return value; the function generates as many png files as there are plates contained in the ExpressionSet object 'eset'
the color codes correspond to the sampleColor column of the pData of the ExpressionSet passed to argument 'eset'; if no sampleColor column is present, the data for all samples will be plotted in 'blue'
TODO
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