boxPlate: Generate a boxplot of normalized probeset intensities for...
In titanQC: QC Procedures for the GeneTitan platform
Description
Usage
Arguments
Value
Note
Description
Generate a boxplot of normalized probeset intensities for each well on the plate
Usage
1
boxPlate(eset, filePrefix="boxPlate")
Arguments
eset
ExpressionSet as generated by the 'preprocessing' function
filePrefix
prefix that will be used to generate the output files; for plate <i>, the default
name will be <filePrefix>Plate<i>.pdf; the default file prefix is "boxPlate"
Value
no return value; for each of the plates contained in the ExpressionSet object 'eset' a plot is generated
Note
the color codes correspond to the sampleColor column of the pData of the ExpressionSet passed to argument
'eset'; if no sampleColor column is present, the boxplots will use 'blue' as the fill color
titanQC documentation built on May 2, 2019, 5:55 p.m.
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Description Usage Arguments Value Note
Description
Generate a boxplot of normalized probeset intensities for each well on the plate
Usage
1 | boxPlate(eset, filePrefix="boxPlate")
|
Arguments
eset |
ExpressionSet as generated by the 'preprocessing' function |
filePrefix |
prefix that will be used to generate the output files; for plate <i>, the default name will be <filePrefix>Plate<i>.pdf; the default file prefix is "boxPlate" |
Value
no return value; for each of the plates contained in the ExpressionSet object 'eset' a plot is generated
Note
the color codes correspond to the sampleColor column of the pData of the ExpressionSet passed to argument 'eset'; if no sampleColor column is present, the boxplots will use 'blue' as the fill color
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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