vegan: Community Ecology Package

Ordination methods, diversity analysis and other functions for community and vegetation ecologists.

AuthorJari Oksanen, F. Guillaume Blanchet, Roeland Kindt, Pierre Legendre, Peter R. Minchin, R. B. O'Hara, Gavin L. Simpson, Peter Solymos, M. Henry H. Stevens, Helene Wagner
Date of publication2016-04-04 07:26:57
MaintainerJari Oksanen <jari.oksanen@oulu.fi>
LicenseGPL-2
Version2.3-5
https://cran.r-project.org
https://github.com/vegandevs/vegan

View on R-Forge

Man pages

add1.cca: Add or Drop Single Terms to a Constrained Ordination Model

adipart: Additive Diversity Partitioning and Hierarchical Null Model...

adonis: Permutational Multivariate Analysis of Variance Using...

anosim: Analysis of Similarities

anova.cca: Permutation Test for Constrained Correspondence Analysis,...

as.mlm: Refit Constrained Ordination as a Multiple Response Linear...

BCI: Barro Colorado Island Tree Counts

beals: Beals Smoothing and Degree of Absence

betadisper: Multivariate homogeneity of groups dispersions (variances)

betadiver: Indices of beta Diversity

bgdispersal: Coefficients of Biogeographical Dispersal Direction

bioenv: Best Subset of Environmental Variables with Maximum (Rank)...

biplot.rda: PCA biplot

capscale: [Partial] Constrained Analysis of Principal Coordinates or...

cascadeKM: K-means partitioning using a range of values of K

cca: [Partial] [Constrained] Correspondence Analysis and...

cca.object: Result Object from Constrained Ordination with cca, rda or...

CCorA: Canonical Correlation Analysis

clamtest: Multinomial Species Classification Method (CLAM)

commsim: Create a Object for Null Model Algorithms

contribdiv: Contribution Diversity Approach

decorana: Detrended Correspondence Analysis and Basic Reciprocal...

decostand: Standardization Methods for Community Ecology

designdist: Design your own Dissimilarities

deviance.cca: Statistics Resembling Deviance and AIC for Constrained...

dispindmorisita: Morisita index of intraspecific aggregation

dispweight: Dispersion-based weighting of species counts

distconnected: Connectedness of Dissimilarities

diversity: Ecological Diversity Indices

dune: Vegetation and Environment in Dutch Dune Meadows.

dune.taxon: Taxonomic Classification and Phylogeny of Dune Meadow Species

eigenvals: Extract Eigenvalues from an Ordination Object

envfit: Fits an Environmental Vector or Factor onto an Ordination

eventstar: Scale Parameter at the Minimum of the Tsallis Evenness...

fisherfit: Fit Fisher's Logseries and Preston's Lognormal Model to...

goodness.cca: Diagnostic Tools for [Constrained] Ordination (CCA, RDA, DCA,...

goodness.metaMDS: Goodness of Fit and Shepard Plot for Nonmetric...

humpfit: No-interaction Model for Hump-backed Species Richness vs....

indpower: Indicator Power of Species

isomap: Isometric Feature Mapping Ordination

kendall.global: Kendall coefficient of concordance

linestack: Plots One-dimensional Diagrams without Overwriting Labels

make.cepnames: Abbreviates a Botanical or Zoological Latin Name into an...

mantel: Mantel and Partial Mantel Tests for Dissimilarity Matrices

mantel.correlog: Mantel Correlogram

MDSrotate: Rotate First MDS Dimension Parallel to an External Variable

metaMDS: Nonmetric Multidimensional Scaling with Stable Solution from...

mite: Oribatid Mite Data with Explanatory Variables

model.matrix.cca: Reconstruct Model Frame and Model Matrices of Constrained...

monoMDS: Global and Local Non-metric Multidimensional Scaling and...

MOStest: Mitchell-Olds & Shaw Test for the Location of Quadratic...

mrpp: Multi Response Permutation Procedure and Mean Dissimilarity...

mso: Functions for performing and displaying a spatial...

multipart: Multiplicative Diversity Partitioning

nestedtemp: Nestedness Indices for Communities of Islands or Patches

nobs.adonis: Extract the Number of Observations from a vegan Fit.

nullmodel: Null Model and Simulation

oecosimu: Evaluate Statistics with Null Models of Biological...

ordiarrows: Add Arrows and Line Segments to Ordination Diagrams

ordiArrowTextXY: Support Functions for Drawing Vectors

ordihull: Display Groups or Factor Levels in Ordination Diagrams

ordilabel: Add Text on Non-transparent Label to an Ordination Plot.

ordiplot: Alternative plot and identify Functions for Ordination

ordipointlabel: Ordination Plots with Points and Optimized Locations for Text

ordiresids: Plots of Residuals and Fitted Values for Constrained...

ordistep: Choose a Model by Permutation Tests in Constrained Ordination

ordisurf: Fit and Plot Smooth Surfaces of Variables on Ordination.

orditkplot: Ordination Plot with Movable Labels

orditorp: Add Text or Points to Ordination Plots

ordixyplot: Trellis (Lattice) Plots for Ordination

pcnm: Principal Coordinates of Neighbourhood Matrix

permatfull: Matrix Permutation Algorithms for Presence-Absence and Count...

permustats: Extract, Analyse and Display Permutation Results

permutations: Permutation tests in Vegan

permutest.betadisper: Permutation test of multivariate homogeneity of groups...

plot.cca: Plot or Extract Results of Constrained Correspondence...

prc: Principal Response Curves for Treatments with Repeated...

predict.cca: Prediction Tools for [Constrained] Ordination (CCA, RDA, DCA,...

procrustes: Procrustes Rotation of Two Configurations and PROTEST

pyrifos: Response of Aquatic Invertebrates to Insecticide Treatment

radfit: Rank - Abundance or Dominance / Diversity Models

rankindex: Compares Dissimilarity Indices for Gradient Detection

rarefy: Rarefaction Species Richness

raupcrick: Raup-Crick Dissimilarity with Unequal Sampling Densities of...

read.cep: Reads a CEP (Canoco) data file

renyi: Renyi and Hill Diversities and Corresponding Accumulation...

reorder.hclust: Reorder a Hierarchical Clustering Tree

RsquareAdj: Adjusted R-square

scores: Get Species or Site Scores from an Ordination

screeplot.cca: Screeplots for Ordination Results and Broken Stick...

simper: Similarity Percentages

simulate.rda: Simulate Responses with Gaussian Error or Permuted Residuals...

sipoo: Birds in the Archipelago of Sipoo (Sibbo)

spantree: Minimum Spanning Tree

specaccum: Species Accumulation Curves

specpool: Extrapolated Species Richness in a Species Pool

SSarrhenius: Self-Starting nls Species-Area Models

stepacross: Stepacross as Flexible Shortest Paths or Extended...

stressplot.wcmdscale: Display Ordination Distances Against Observed Distances in...

taxondive: Indices of Taxonomic Diversity and Distinctness

tolerance: Species tolerances and sample heterogeneities

treedive: Functional Diversity and Community Distances from Species...

tsallis: Tsallis Diversity and Corresponding Accumulation Curves

varechem: Vegetation and environment in lichen pastures

varpart: Partition the Variation of Community Matrix by 2, 3, or 4...

vegan-defunct: Defunct Functions in Package 'vegan'

vegan-deprecated: Deprecated Functions in vegan package

vegandocs: Display vegan Documentation

vegan-internal: Internal vegan functions

vegan-package: Community Ecology Package: Ordination, Diversity and...

vegdist: Dissimilarity Indices for Community Ecologists

vegemite: Display Compact Ordered Community Tables

wascores: Weighted Averages Scores for Species

wcmdscale: Weighted Classical (Metric) Multidimensional Scaling

Files in this package

vegan/DESCRIPTION
vegan/NAMESPACE
vegan/R
vegan/R/AIC.radfit.R vegan/R/CCorA.R vegan/R/MDSrotate.R vegan/R/MOStest.R vegan/R/RsquareAdj.R vegan/R/SSarrhenius.R vegan/R/SSgitay.R vegan/R/SSgleason.R vegan/R/SSlomolino.R vegan/R/TukeyHSD.betadisper.R vegan/R/add1.cca.R vegan/R/ade2vegancca.R vegan/R/adipart.R vegan/R/adipart.default.R vegan/R/adipart.formula.R vegan/R/adonis.R vegan/R/alias.cca.R vegan/R/anosim.R vegan/R/anova.betadisper.R vegan/R/anova.cca.R vegan/R/anova.ccabyterm.R vegan/R/anova.ccalist.R vegan/R/anova.ccanull.R vegan/R/anova.prc.R vegan/R/as.fisher.R vegan/R/as.hclust.spantree.R vegan/R/as.mcmc.oecosimu.R vegan/R/as.mcmc.permat.R vegan/R/as.mlm.R vegan/R/as.mlm.cca.R vegan/R/as.mlm.rda.R vegan/R/as.preston.R vegan/R/as.rad.R vegan/R/as.ts.oecosimu.R vegan/R/as.ts.permat.R vegan/R/beals.R vegan/R/betadisper.R vegan/R/betadiver.R vegan/R/bgdispersal.R vegan/R/bioenv.R vegan/R/bioenv.default.R vegan/R/bioenv.formula.R vegan/R/biplot.CCorA.R vegan/R/biplot.rda.R vegan/R/boxplot.betadisper.R vegan/R/boxplot.specaccum.R vegan/R/bstick.R vegan/R/bstick.cca.R vegan/R/bstick.decorana.R vegan/R/bstick.default.R vegan/R/bstick.prcomp.R vegan/R/bstick.princomp.R vegan/R/cIndexKM.R vegan/R/calibrate.R vegan/R/calibrate.cca.R vegan/R/calibrate.ordisurf.R vegan/R/capscale.R vegan/R/cascadeKM.R vegan/R/cca.R vegan/R/cca.default.R vegan/R/cca.formula.R vegan/R/centroids.cca.R vegan/R/checkSelect.R vegan/R/clamtest.R vegan/R/coef.cca.R vegan/R/coef.radfit.R vegan/R/coef.rda.R vegan/R/commsim.R vegan/R/confint.MOStest.R vegan/R/contribdiv.R vegan/R/cophenetic.spantree.R vegan/R/coverscale.R vegan/R/decorana.R vegan/R/decostand.R vegan/R/designdist.R vegan/R/deviance.cca.R vegan/R/deviance.rda.R vegan/R/dispindmorisita.R vegan/R/dispweight.R vegan/R/distconnected.R vegan/R/diversity.R vegan/R/downweight.R vegan/R/drop1.cca.R vegan/R/eigengrad.R vegan/R/eigenvals.R vegan/R/envfit.R vegan/R/envfit.default.R vegan/R/envfit.formula.R vegan/R/estaccumR.R vegan/R/estimateR.R vegan/R/estimateR.data.frame.R vegan/R/estimateR.default.R vegan/R/estimateR.matrix.R vegan/R/eventstar.R vegan/R/extractAIC.cca.R vegan/R/factorfit.R vegan/R/fieller.MOStest.R vegan/R/fisher.alpha.R vegan/R/fisherfit.R vegan/R/fitspecaccum.R vegan/R/fitted.capscale.R vegan/R/fitted.cca.R vegan/R/fitted.procrustes.R vegan/R/fitted.radfit.R vegan/R/fitted.rda.R vegan/R/gdispweight.R vegan/R/getPermuteMatrix.R vegan/R/goodness.R vegan/R/goodness.cca.R vegan/R/goodness.metaMDS.R vegan/R/head.summary.cca.R vegan/R/hierParseFormula.R vegan/R/hiersimu.R vegan/R/hiersimu.default.R vegan/R/hiersimu.formula.R vegan/R/howHead.R vegan/R/humpfit.R vegan/R/identify.ordiplot.R vegan/R/indpower.R vegan/R/inertcomp.R vegan/R/initMDS.R vegan/R/intersetcor.R vegan/R/isomap.R vegan/R/isomapdist.R vegan/R/kendall.global.R vegan/R/kendall.post.R vegan/R/labels.envfit.R vegan/R/lines.humpfit.R vegan/R/lines.permat.R vegan/R/lines.prestonfit.R vegan/R/lines.procrustes.R vegan/R/lines.radline.R vegan/R/lines.spantree.R vegan/R/linestack.R vegan/R/make.cepnames.R vegan/R/make.commsim.R vegan/R/mantel.R vegan/R/mantel.correlog.R vegan/R/mantel.partial.R vegan/R/meandist.R vegan/R/metaMDS.R vegan/R/metaMDSdist.R vegan/R/metaMDSiter.R vegan/R/metaMDSredist.R vegan/R/model.frame.cca.R vegan/R/model.matrix.cca.R vegan/R/monoMDS.R vegan/R/mrpp.R vegan/R/mso.R vegan/R/msoplot.R vegan/R/multipart.R vegan/R/multipart.default.R vegan/R/multipart.formula.R vegan/R/nestedbetasor.R vegan/R/nestedchecker.R vegan/R/nesteddisc.R vegan/R/nestedn0.R vegan/R/nestednodf.R vegan/R/nestedtemp.R vegan/R/no.shared.R vegan/R/nobs.R vegan/R/nullmodel.R vegan/R/oecosimu.R vegan/R/orderingKM.R vegan/R/ordiArgAbsorber.R vegan/R/ordiArrowMul.R vegan/R/ordiArrowTextXY.R vegan/R/ordiGetData.R vegan/R/ordiNAexclude.R vegan/R/ordiParseFormula.R vegan/R/ordiR2step.R vegan/R/ordiTerminfo.R vegan/R/ordiareatest.R vegan/R/ordiarrows.R vegan/R/ordicloud.R vegan/R/ordicluster.R vegan/R/ordiellipse.R vegan/R/ordigrid.R vegan/R/ordihull.R vegan/R/ordilabel.R vegan/R/ordilattice.getEnvfit.R vegan/R/ordimedian.R vegan/R/ordiplot.R vegan/R/ordipointlabel.R vegan/R/ordiresids.R vegan/R/ordisegments.R vegan/R/ordispider.R vegan/R/ordisplom.R vegan/R/ordistep.R vegan/R/ordisurf.R vegan/R/orditkplot.R vegan/R/orditorp.R vegan/R/ordixyplot.R vegan/R/panel.ordi.R vegan/R/panel.ordi3d.R vegan/R/pasteCall.R vegan/R/pcnm.R vegan/R/permatfull.R vegan/R/permatswap.R vegan/R/permustats.R vegan/R/permuted.index.R vegan/R/permutest.betadisper.R vegan/R/permutest.cca.R vegan/R/persp.renyiaccum.R vegan/R/persp.tsallisaccum.R vegan/R/plot.MOStest.R vegan/R/plot.anosim.R vegan/R/plot.betadisper.R vegan/R/plot.betadiver.R vegan/R/plot.cascadeKM.R vegan/R/plot.cca.R vegan/R/plot.clamtest.R vegan/R/plot.contribdiv.R vegan/R/plot.decorana.R vegan/R/plot.envfit.R vegan/R/plot.fisherfit.R vegan/R/plot.humpfit.R vegan/R/plot.isomap.R vegan/R/plot.mantel.correlog.R vegan/R/plot.meandist.R vegan/R/plot.metaMDS.R vegan/R/plot.nestedtemp.R vegan/R/plot.ordipointlabel.R vegan/R/plot.ordisurf.R vegan/R/plot.orditkplot.R vegan/R/plot.permat.R vegan/R/plot.poolaccum.R vegan/R/plot.prc.R vegan/R/plot.preston.R vegan/R/plot.prestonfit.R vegan/R/plot.procrustes.R vegan/R/plot.rad.R vegan/R/plot.radfit.R vegan/R/plot.radfit.frame.R vegan/R/plot.radline.R vegan/R/plot.renyi.R vegan/R/plot.renyiaccum.R vegan/R/plot.spantree.R vegan/R/plot.specaccum.R vegan/R/plot.taxondive.R vegan/R/plot.varpart.R vegan/R/plot.varpart234.R vegan/R/points.cca.R vegan/R/points.decorana.R vegan/R/points.humpfit.R vegan/R/points.metaMDS.R vegan/R/points.ordiplot.R vegan/R/points.orditkplot.R vegan/R/points.procrustes.R vegan/R/points.radline.R vegan/R/poolaccum.R vegan/R/postMDS.R vegan/R/prc.R vegan/R/predict.cca.R vegan/R/predict.decorana.R vegan/R/predict.fitspecaccum.R vegan/R/predict.humpfit.R vegan/R/predict.radline.R vegan/R/predict.rda.R vegan/R/predict.specaccum.R vegan/R/pregraphKM.R vegan/R/prepanel.ordi3d.R vegan/R/prestondistr.R vegan/R/prestonfit.R vegan/R/print.CCorA.R vegan/R/print.MOStest.R vegan/R/print.adonis.R vegan/R/print.anosim.R vegan/R/print.betadisper.R vegan/R/print.bioenv.R vegan/R/print.capscale.R vegan/R/print.cca.R vegan/R/print.commsim.R vegan/R/print.decorana.R vegan/R/print.envfit.R vegan/R/print.factorfit.R vegan/R/print.fisherfit.R vegan/R/print.humpfit.R vegan/R/print.isomap.R vegan/R/print.mantel.R vegan/R/print.mantel.correlog.R vegan/R/print.metaMDS.R vegan/R/print.monoMDS.R vegan/R/print.mrpp.R vegan/R/print.mso.R vegan/R/print.nestedchecker.R vegan/R/print.nesteddisc.R vegan/R/print.nestedn0.R vegan/R/print.nestednodf.R vegan/R/print.nestedtemp.R vegan/R/print.nullmodel.R vegan/R/print.oecosimu.R vegan/R/print.permat.R vegan/R/print.permutest.betadisper.R vegan/R/print.permutest.cca.R vegan/R/print.poolaccum.R vegan/R/print.prestonfit.R vegan/R/print.procrustes.R vegan/R/print.protest.R vegan/R/print.radfit.R vegan/R/print.radfit.frame.R vegan/R/print.radline.R vegan/R/print.simmat.R vegan/R/print.specaccum.R vegan/R/print.summary.bioenv.R vegan/R/print.summary.cca.R vegan/R/print.summary.clamtest.R vegan/R/print.summary.decorana.R vegan/R/print.summary.humpfit.R vegan/R/print.summary.isomap.R vegan/R/print.summary.meandist.R vegan/R/print.summary.permat.R vegan/R/print.summary.prc.R vegan/R/print.summary.procrustes.R vegan/R/print.summary.taxondive.R vegan/R/print.taxondive.R vegan/R/print.varpart.R vegan/R/print.varpart234.R vegan/R/print.vectorfit.R vegan/R/print.wcmdscale.R vegan/R/procrustes.R vegan/R/profile.MOStest.R vegan/R/profile.humpfit.R vegan/R/protest.R vegan/R/rad.lognormal.R vegan/R/rad.null.R vegan/R/rad.preempt.R vegan/R/rad.zipf.R vegan/R/rad.zipfbrot.R vegan/R/radfit.R vegan/R/radfit.data.frame.R vegan/R/radfit.default.R vegan/R/radlattice.R vegan/R/rankindex.R vegan/R/rarecurve.R vegan/R/rarefy.R vegan/R/rareslope.R vegan/R/raupcrick.R vegan/R/rda.R vegan/R/rda.default.R vegan/R/rda.formula.R vegan/R/read.cep.R vegan/R/renyi.R vegan/R/renyiaccum.R vegan/R/residuals.cca.R vegan/R/residuals.procrustes.R vegan/R/rrarefy.R vegan/R/scalingUtils.R vegan/R/scores.R vegan/R/scores.betadisper.R vegan/R/scores.betadiver.R vegan/R/scores.cca.R vegan/R/scores.decorana.R vegan/R/scores.default.R vegan/R/scores.envfit.R vegan/R/scores.lda.R vegan/R/scores.metaMDS.R vegan/R/scores.ordihull.R vegan/R/scores.ordiplot.R vegan/R/scores.orditkplot.R vegan/R/scores.pcnm.R vegan/R/scores.rda.R vegan/R/screeplot.cca.R vegan/R/screeplot.decorana.R vegan/R/screeplot.prcomp.R vegan/R/screeplot.princomp.R vegan/R/showvarparts.R vegan/R/simper.R vegan/R/simpleRDA2.R vegan/R/simulate.nullmodel.R vegan/R/simulate.rda.R vegan/R/spandepth.R vegan/R/spantree.R vegan/R/specaccum.R vegan/R/specnumber.R vegan/R/specpool.R vegan/R/specpool2vect.R vegan/R/specslope.R vegan/R/spenvcor.R vegan/R/stepacross.R vegan/R/str.nullmodel.R vegan/R/stressplot.R vegan/R/stressplot.wcmdscale.R vegan/R/summary.anosim.R vegan/R/summary.bioenv.R vegan/R/summary.cca.R vegan/R/summary.clamtest.R vegan/R/summary.decorana.R vegan/R/summary.dispweight.R vegan/R/summary.humpfit.R vegan/R/summary.isomap.R vegan/R/summary.meandist.R vegan/R/summary.ordiellipse.R vegan/R/summary.ordihull.R vegan/R/summary.permat.R vegan/R/summary.poolaccum.R vegan/R/summary.prc.R vegan/R/summary.procrustes.R vegan/R/summary.radfit.frame.R vegan/R/summary.specaccum.R vegan/R/summary.taxondive.R vegan/R/swan.R vegan/R/tabasco.R vegan/R/taxa2dist.R vegan/R/taxondive.R vegan/R/text.cca.R vegan/R/text.decorana.R vegan/R/text.metaMDS.R vegan/R/text.ordiplot.R vegan/R/text.orditkplot.R vegan/R/tolerance.R vegan/R/tolerance.cca.R vegan/R/treedist.R vegan/R/treedive.R vegan/R/treeheight.R vegan/R/tsallis.R vegan/R/tsallisaccum.R vegan/R/update.nullmodel.R vegan/R/varpart.R vegan/R/varpart2.R vegan/R/varpart3.R vegan/R/varpart4.R vegan/R/vectorfit.R vegan/R/vegan-defunct.R vegan/R/vegan-deprecated.R vegan/R/veganCovEllipse.R vegan/R/veganMahatrans.R vegan/R/vegandocs.R vegan/R/vegdist.R vegan/R/vegemite.R vegan/R/veiledspec.R vegan/R/vif.cca.R vegan/R/wascores.R vegan/R/wcmdscale.R vegan/R/weights.cca.R vegan/R/weights.decorana.R vegan/R/weights.rda.R vegan/R/wisconsin.R vegan/R/zzz.R
vegan/build
vegan/build/vignette.rds
vegan/data
vegan/data/BCI.env.rda
vegan/data/BCI.rda
vegan/data/dune.env.rda
vegan/data/dune.phylodis.rda
vegan/data/dune.rda
vegan/data/dune.taxon.rda
vegan/data/mite.env.rda
vegan/data/mite.pcnm.rda
vegan/data/mite.rda
vegan/data/mite.xy.rda
vegan/data/pyrifos.rda
vegan/data/sipoo.rda
vegan/data/varechem.rda
vegan/data/varespec.rda
vegan/inst
vegan/inst/ChangeLog
vegan/inst/NEWS.Rd
vegan/inst/ONEWS
vegan/inst/doc
vegan/inst/doc/FAQ-vegan.Rmd
vegan/inst/doc/FAQ-vegan.html
vegan/inst/doc/decision-vegan.R
vegan/inst/doc/decision-vegan.Rnw
vegan/inst/doc/decision-vegan.pdf
vegan/inst/doc/diversity-vegan.R
vegan/inst/doc/diversity-vegan.Rnw
vegan/inst/doc/diversity-vegan.pdf
vegan/inst/doc/intro-vegan.R
vegan/inst/doc/intro-vegan.Rnw
vegan/inst/doc/intro-vegan.pdf
vegan/inst/doc/partitioning.R
vegan/inst/doc/partitioning.Rnw
vegan/inst/doc/partitioning.pdf
vegan/man
vegan/man/BCI.Rd vegan/man/CCorA.Rd vegan/man/MDSrotate.Rd vegan/man/MOStest.Rd vegan/man/RsquareAdj.Rd vegan/man/SSarrhenius.Rd vegan/man/add1.cca.Rd vegan/man/adipart.Rd vegan/man/adonis.Rd vegan/man/anosim.Rd vegan/man/anova.cca.Rd vegan/man/as.mlm.Rd vegan/man/beals.Rd vegan/man/betadisper.Rd vegan/man/betadiver.Rd vegan/man/bgdispersal.Rd vegan/man/bioenv.Rd vegan/man/biplot.rda.Rd vegan/man/capscale.Rd vegan/man/cascadeKM.Rd vegan/man/cca.Rd vegan/man/cca.object.Rd vegan/man/clamtest.Rd vegan/man/commsim.Rd vegan/man/contribdiv.Rd vegan/man/decorana.Rd vegan/man/decostand.Rd vegan/man/designdist.Rd vegan/man/deviance.cca.Rd vegan/man/dispindmorisita.Rd vegan/man/dispweight.Rd vegan/man/distconnected.Rd vegan/man/diversity.Rd vegan/man/dune.Rd vegan/man/dune.taxon.Rd vegan/man/eigenvals.Rd vegan/man/envfit.Rd vegan/man/eventstar.Rd vegan/man/fisherfit.Rd vegan/man/goodness.cca.Rd vegan/man/goodness.metaMDS.Rd vegan/man/humpfit.Rd vegan/man/indpower.Rd vegan/man/isomap.Rd vegan/man/kendall.global.Rd vegan/man/linestack.Rd vegan/man/make.cepnames.Rd vegan/man/mantel.Rd vegan/man/mantel.correlog.Rd vegan/man/metaMDS.Rd vegan/man/mite.Rd vegan/man/model.matrix.cca.Rd vegan/man/monoMDS.Rd vegan/man/mrpp.Rd vegan/man/mso.Rd vegan/man/multipart.Rd vegan/man/nestedtemp.Rd vegan/man/nobs.adonis.Rd vegan/man/nullmodel.Rd vegan/man/oecosimu.Rd vegan/man/ordiArrowTextXY.Rd vegan/man/ordiarrows.Rd vegan/man/ordihull.Rd vegan/man/ordilabel.Rd vegan/man/ordiplot.Rd vegan/man/ordipointlabel.Rd vegan/man/ordiresids.Rd vegan/man/ordistep.Rd vegan/man/ordisurf.Rd vegan/man/orditkplot.Rd vegan/man/orditorp.Rd vegan/man/ordixyplot.Rd vegan/man/pcnm.Rd vegan/man/permatfull.Rd vegan/man/permustats.Rd vegan/man/permutations.Rd vegan/man/permutest.betadisper.Rd vegan/man/plot.cca.Rd vegan/man/prc.Rd vegan/man/predict.cca.Rd vegan/man/procrustes.Rd vegan/man/pyrifos.Rd vegan/man/radfit.Rd vegan/man/rankindex.Rd vegan/man/rarefy.Rd vegan/man/raupcrick.Rd vegan/man/read.cep.Rd vegan/man/renyi.Rd vegan/man/reorder.hclust.Rd vegan/man/scores.Rd vegan/man/screeplot.cca.Rd vegan/man/simper.Rd vegan/man/simulate.rda.Rd vegan/man/sipoo.Rd vegan/man/spantree.Rd vegan/man/specaccum.Rd vegan/man/specpool.Rd vegan/man/stepacross.Rd vegan/man/stressplot.wcmdscale.Rd vegan/man/taxondive.Rd vegan/man/tolerance.Rd vegan/man/treedive.Rd vegan/man/tsallis.Rd vegan/man/varechem.Rd vegan/man/varpart.Rd vegan/man/vegan-defunct.Rd vegan/man/vegan-deprecated.Rd vegan/man/vegan-internal.Rd vegan/man/vegan-package.Rd vegan/man/vegandocs.Rd vegan/man/vegdist.Rd vegan/man/vegemite.Rd vegan/man/wascores.Rd vegan/man/wcmdscale.Rd
vegan/src
vegan/src/cepin.f
vegan/src/data2hill.c
vegan/src/decorana.f
vegan/src/goffactor.c
vegan/src/monoMDS.f
vegan/src/nestedness.c
vegan/src/ordering.f
vegan/src/pnpoly.c
vegan/src/stepacross.c
vegan/src/vegdist.c
vegan/vignettes
vegan/vignettes/FAQ-vegan.Rmd
vegan/vignettes/decision-vegan.Rnw
vegan/vignettes/diversity-vegan.Rnw
vegan/vignettes/intro-vegan.Rnw
vegan/vignettes/partitioning.Rnw
vegan/vignettes/varpart23.pdf
vegan/vignettes/varpart4.pdf
vegan/vignettes/vegan.bib
vegan/vignettes/vegan.sty

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