vegan: Community Ecology Package

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Ordination methods, diversity analysis and other functions for community and vegetation ecologists.

Author
Jari Oksanen, F. Guillaume Blanchet, Roeland Kindt, Pierre Legendre, Peter R. Minchin, R. B. O'Hara, Gavin L. Simpson, Peter Solymos, M. Henry H. Stevens, Helene Wagner
Date of publication
2016-04-04 07:26:57
Maintainer
Jari Oksanen <jari.oksanen@oulu.fi>
License
GPL-2
Version
2.3-5
URLs

View on R-Forge

Man pages

add1.cca
Add or Drop Single Terms to a Constrained Ordination Model
adipart
Additive Diversity Partitioning and Hierarchical Null Model...
adonis
Permutational Multivariate Analysis of Variance Using...
anosim
Analysis of Similarities
anova.cca
Permutation Test for Constrained Correspondence Analysis,...
as.mlm
Refit Constrained Ordination as a Multiple Response Linear...
BCI
Barro Colorado Island Tree Counts
beals
Beals Smoothing and Degree of Absence
betadisper
Multivariate homogeneity of groups dispersions (variances)
betadiver
Indices of beta Diversity
bgdispersal
Coefficients of Biogeographical Dispersal Direction
bioenv
Best Subset of Environmental Variables with Maximum (Rank)...
biplot.rda
PCA biplot
capscale
[Partial] Constrained Analysis of Principal Coordinates or...
cascadeKM
K-means partitioning using a range of values of K
cca
[Partial] [Constrained] Correspondence Analysis and...
cca.object
Result Object from Constrained Ordination with cca, rda or...
CCorA
Canonical Correlation Analysis
clamtest
Multinomial Species Classification Method (CLAM)
commsim
Create a Object for Null Model Algorithms
contribdiv
Contribution Diversity Approach
decorana
Detrended Correspondence Analysis and Basic Reciprocal...
decostand
Standardization Methods for Community Ecology
designdist
Design your own Dissimilarities
deviance.cca
Statistics Resembling Deviance and AIC for Constrained...
dispindmorisita
Morisita index of intraspecific aggregation
dispweight
Dispersion-based weighting of species counts
distconnected
Connectedness of Dissimilarities
diversity
Ecological Diversity Indices
dune
Vegetation and Environment in Dutch Dune Meadows.
dune.taxon
Taxonomic Classification and Phylogeny of Dune Meadow Species
eigenvals
Extract Eigenvalues from an Ordination Object
envfit
Fits an Environmental Vector or Factor onto an Ordination
eventstar
Scale Parameter at the Minimum of the Tsallis Evenness...
fisherfit
Fit Fisher's Logseries and Preston's Lognormal Model to...
goodness.cca
Diagnostic Tools for [Constrained] Ordination (CCA, RDA, DCA,...
goodness.metaMDS
Goodness of Fit and Shepard Plot for Nonmetric...
humpfit
No-interaction Model for Hump-backed Species Richness vs....
indpower
Indicator Power of Species
isomap
Isometric Feature Mapping Ordination
kendall.global
Kendall coefficient of concordance
linestack
Plots One-dimensional Diagrams without Overwriting Labels
make.cepnames
Abbreviates a Botanical or Zoological Latin Name into an...
mantel
Mantel and Partial Mantel Tests for Dissimilarity Matrices
mantel.correlog
Mantel Correlogram
MDSrotate
Rotate First MDS Dimension Parallel to an External Variable
metaMDS
Nonmetric Multidimensional Scaling with Stable Solution from...
mite
Oribatid Mite Data with Explanatory Variables
model.matrix.cca
Reconstruct Model Frame and Model Matrices of Constrained...
monoMDS
Global and Local Non-metric Multidimensional Scaling and...
MOStest
Mitchell-Olds & Shaw Test for the Location of Quadratic...
mrpp
Multi Response Permutation Procedure and Mean Dissimilarity...
mso
Functions for performing and displaying a spatial...
multipart
Multiplicative Diversity Partitioning
nestedtemp
Nestedness Indices for Communities of Islands or Patches
nobs.adonis
Extract the Number of Observations from a vegan Fit.
nullmodel
Null Model and Simulation
oecosimu
Evaluate Statistics with Null Models of Biological...
ordiarrows
Add Arrows and Line Segments to Ordination Diagrams
ordiArrowTextXY
Support Functions for Drawing Vectors
ordihull
Display Groups or Factor Levels in Ordination Diagrams
ordilabel
Add Text on Non-transparent Label to an Ordination Plot.
ordiplot
Alternative plot and identify Functions for Ordination
ordipointlabel
Ordination Plots with Points and Optimized Locations for Text
ordiresids
Plots of Residuals and Fitted Values for Constrained...
ordistep
Choose a Model by Permutation Tests in Constrained Ordination
ordisurf
Fit and Plot Smooth Surfaces of Variables on Ordination.
orditkplot
Ordination Plot with Movable Labels
orditorp
Add Text or Points to Ordination Plots
ordixyplot
Trellis (Lattice) Plots for Ordination
pcnm
Principal Coordinates of Neighbourhood Matrix
permatfull
Matrix Permutation Algorithms for Presence-Absence and Count...
permustats
Extract, Analyse and Display Permutation Results
permutations
Permutation tests in Vegan
permutest.betadisper
Permutation test of multivariate homogeneity of groups...
plot.cca
Plot or Extract Results of Constrained Correspondence...
prc
Principal Response Curves for Treatments with Repeated...
predict.cca
Prediction Tools for [Constrained] Ordination (CCA, RDA, DCA,...
procrustes
Procrustes Rotation of Two Configurations and PROTEST
pyrifos
Response of Aquatic Invertebrates to Insecticide Treatment
radfit
Rank - Abundance or Dominance / Diversity Models
rankindex
Compares Dissimilarity Indices for Gradient Detection
rarefy
Rarefaction Species Richness
raupcrick
Raup-Crick Dissimilarity with Unequal Sampling Densities of...
read.cep
Reads a CEP (Canoco) data file
renyi
Renyi and Hill Diversities and Corresponding Accumulation...
reorder.hclust
Reorder a Hierarchical Clustering Tree
RsquareAdj
Adjusted R-square
scores
Get Species or Site Scores from an Ordination
screeplot.cca
Screeplots for Ordination Results and Broken Stick...
simper
Similarity Percentages
simulate.rda
Simulate Responses with Gaussian Error or Permuted Residuals...
sipoo
Birds in the Archipelago of Sipoo (Sibbo)
spantree
Minimum Spanning Tree
specaccum
Species Accumulation Curves
specpool
Extrapolated Species Richness in a Species Pool
SSarrhenius
Self-Starting nls Species-Area Models
stepacross
Stepacross as Flexible Shortest Paths or Extended...
stressplot.wcmdscale
Display Ordination Distances Against Observed Distances in...
taxondive
Indices of Taxonomic Diversity and Distinctness
tolerance
Species tolerances and sample heterogeneities
treedive
Functional Diversity and Community Distances from Species...
tsallis
Tsallis Diversity and Corresponding Accumulation Curves
varechem
Vegetation and environment in lichen pastures
varpart
Partition the Variation of Community Matrix by 2, 3, or 4...
vegan-defunct
Defunct Functions in Package 'vegan'
vegan-deprecated
Deprecated Functions in vegan package
vegandocs
Display vegan Documentation
vegan-internal
Internal vegan functions
vegan-package
Community Ecology Package: Ordination, Diversity and...
vegdist
Dissimilarity Indices for Community Ecologists
vegemite
Display Compact Ordered Community Tables
wascores
Weighted Averages Scores for Species
wcmdscale
Weighted Classical (Metric) Multidimensional Scaling

Files in this package

vegan/DESCRIPTION
vegan/NAMESPACE
vegan/R
vegan/R/AIC.radfit.R
vegan/R/CCorA.R
vegan/R/MDSrotate.R
vegan/R/MOStest.R
vegan/R/RsquareAdj.R
vegan/R/SSarrhenius.R
vegan/R/SSgitay.R
vegan/R/SSgleason.R
vegan/R/SSlomolino.R
vegan/R/TukeyHSD.betadisper.R
vegan/R/add1.cca.R
vegan/R/ade2vegancca.R
vegan/R/adipart.R
vegan/R/adipart.default.R
vegan/R/adipart.formula.R
vegan/R/adonis.R
vegan/R/alias.cca.R
vegan/R/anosim.R
vegan/R/anova.betadisper.R
vegan/R/anova.cca.R
vegan/R/anova.ccabyterm.R
vegan/R/anova.ccalist.R
vegan/R/anova.ccanull.R
vegan/R/anova.prc.R
vegan/R/as.fisher.R
vegan/R/as.hclust.spantree.R
vegan/R/as.mcmc.oecosimu.R
vegan/R/as.mcmc.permat.R
vegan/R/as.mlm.R
vegan/R/as.mlm.cca.R
vegan/R/as.mlm.rda.R
vegan/R/as.preston.R
vegan/R/as.rad.R
vegan/R/as.ts.oecosimu.R
vegan/R/as.ts.permat.R
vegan/R/beals.R
vegan/R/betadisper.R
vegan/R/betadiver.R
vegan/R/bgdispersal.R
vegan/R/bioenv.R
vegan/R/bioenv.default.R
vegan/R/bioenv.formula.R
vegan/R/biplot.CCorA.R
vegan/R/biplot.rda.R
vegan/R/boxplot.betadisper.R
vegan/R/boxplot.specaccum.R
vegan/R/bstick.R
vegan/R/bstick.cca.R
vegan/R/bstick.decorana.R
vegan/R/bstick.default.R
vegan/R/bstick.prcomp.R
vegan/R/bstick.princomp.R
vegan/R/cIndexKM.R
vegan/R/calibrate.R
vegan/R/calibrate.cca.R
vegan/R/calibrate.ordisurf.R
vegan/R/capscale.R
vegan/R/cascadeKM.R
vegan/R/cca.R
vegan/R/cca.default.R
vegan/R/cca.formula.R
vegan/R/centroids.cca.R
vegan/R/checkSelect.R
vegan/R/clamtest.R
vegan/R/coef.cca.R
vegan/R/coef.radfit.R
vegan/R/coef.rda.R
vegan/R/commsim.R
vegan/R/confint.MOStest.R
vegan/R/contribdiv.R
vegan/R/cophenetic.spantree.R
vegan/R/coverscale.R
vegan/R/decorana.R
vegan/R/decostand.R
vegan/R/designdist.R
vegan/R/deviance.cca.R
vegan/R/deviance.rda.R
vegan/R/dispindmorisita.R
vegan/R/dispweight.R
vegan/R/distconnected.R
vegan/R/diversity.R
vegan/R/downweight.R
vegan/R/drop1.cca.R
vegan/R/eigengrad.R
vegan/R/eigenvals.R
vegan/R/envfit.R
vegan/R/envfit.default.R
vegan/R/envfit.formula.R
vegan/R/estaccumR.R
vegan/R/estimateR.R
vegan/R/estimateR.data.frame.R
vegan/R/estimateR.default.R
vegan/R/estimateR.matrix.R
vegan/R/eventstar.R
vegan/R/extractAIC.cca.R
vegan/R/factorfit.R
vegan/R/fieller.MOStest.R
vegan/R/fisher.alpha.R
vegan/R/fisherfit.R
vegan/R/fitspecaccum.R
vegan/R/fitted.capscale.R
vegan/R/fitted.cca.R
vegan/R/fitted.procrustes.R
vegan/R/fitted.radfit.R
vegan/R/fitted.rda.R
vegan/R/gdispweight.R
vegan/R/getPermuteMatrix.R
vegan/R/goodness.R
vegan/R/goodness.cca.R
vegan/R/goodness.metaMDS.R
vegan/R/head.summary.cca.R
vegan/R/hierParseFormula.R
vegan/R/hiersimu.R
vegan/R/hiersimu.default.R
vegan/R/hiersimu.formula.R
vegan/R/howHead.R
vegan/R/humpfit.R
vegan/R/identify.ordiplot.R
vegan/R/indpower.R
vegan/R/inertcomp.R
vegan/R/initMDS.R
vegan/R/intersetcor.R
vegan/R/isomap.R
vegan/R/isomapdist.R
vegan/R/kendall.global.R
vegan/R/kendall.post.R
vegan/R/labels.envfit.R
vegan/R/lines.humpfit.R
vegan/R/lines.permat.R
vegan/R/lines.prestonfit.R
vegan/R/lines.procrustes.R
vegan/R/lines.radline.R
vegan/R/lines.spantree.R
vegan/R/linestack.R
vegan/R/make.cepnames.R
vegan/R/make.commsim.R
vegan/R/mantel.R
vegan/R/mantel.correlog.R
vegan/R/mantel.partial.R
vegan/R/meandist.R
vegan/R/metaMDS.R
vegan/R/metaMDSdist.R
vegan/R/metaMDSiter.R
vegan/R/metaMDSredist.R
vegan/R/model.frame.cca.R
vegan/R/model.matrix.cca.R
vegan/R/monoMDS.R
vegan/R/mrpp.R
vegan/R/mso.R
vegan/R/msoplot.R
vegan/R/multipart.R
vegan/R/multipart.default.R
vegan/R/multipart.formula.R
vegan/R/nestedbetasor.R
vegan/R/nestedchecker.R
vegan/R/nesteddisc.R
vegan/R/nestedn0.R
vegan/R/nestednodf.R
vegan/R/nestedtemp.R
vegan/R/no.shared.R
vegan/R/nobs.R
vegan/R/nullmodel.R
vegan/R/oecosimu.R
vegan/R/orderingKM.R
vegan/R/ordiArgAbsorber.R
vegan/R/ordiArrowMul.R
vegan/R/ordiArrowTextXY.R
vegan/R/ordiGetData.R
vegan/R/ordiNAexclude.R
vegan/R/ordiParseFormula.R
vegan/R/ordiR2step.R
vegan/R/ordiTerminfo.R
vegan/R/ordiareatest.R
vegan/R/ordiarrows.R
vegan/R/ordicloud.R
vegan/R/ordicluster.R
vegan/R/ordiellipse.R
vegan/R/ordigrid.R
vegan/R/ordihull.R
vegan/R/ordilabel.R
vegan/R/ordilattice.getEnvfit.R
vegan/R/ordimedian.R
vegan/R/ordiplot.R
vegan/R/ordipointlabel.R
vegan/R/ordiresids.R
vegan/R/ordisegments.R
vegan/R/ordispider.R
vegan/R/ordisplom.R
vegan/R/ordistep.R
vegan/R/ordisurf.R
vegan/R/orditkplot.R
vegan/R/orditorp.R
vegan/R/ordixyplot.R
vegan/R/panel.ordi.R
vegan/R/panel.ordi3d.R
vegan/R/pasteCall.R
vegan/R/pcnm.R
vegan/R/permatfull.R
vegan/R/permatswap.R
vegan/R/permustats.R
vegan/R/permuted.index.R
vegan/R/permutest.betadisper.R
vegan/R/permutest.cca.R
vegan/R/persp.renyiaccum.R
vegan/R/persp.tsallisaccum.R
vegan/R/plot.MOStest.R
vegan/R/plot.anosim.R
vegan/R/plot.betadisper.R
vegan/R/plot.betadiver.R
vegan/R/plot.cascadeKM.R
vegan/R/plot.cca.R
vegan/R/plot.clamtest.R
vegan/R/plot.contribdiv.R
vegan/R/plot.decorana.R
vegan/R/plot.envfit.R
vegan/R/plot.fisherfit.R
vegan/R/plot.humpfit.R
vegan/R/plot.isomap.R
vegan/R/plot.mantel.correlog.R
vegan/R/plot.meandist.R
vegan/R/plot.metaMDS.R
vegan/R/plot.nestedtemp.R
vegan/R/plot.ordipointlabel.R
vegan/R/plot.ordisurf.R
vegan/R/plot.orditkplot.R
vegan/R/plot.permat.R
vegan/R/plot.poolaccum.R
vegan/R/plot.prc.R
vegan/R/plot.preston.R
vegan/R/plot.prestonfit.R
vegan/R/plot.procrustes.R
vegan/R/plot.rad.R
vegan/R/plot.radfit.R
vegan/R/plot.radfit.frame.R
vegan/R/plot.radline.R
vegan/R/plot.renyi.R
vegan/R/plot.renyiaccum.R
vegan/R/plot.spantree.R
vegan/R/plot.specaccum.R
vegan/R/plot.taxondive.R
vegan/R/plot.varpart.R
vegan/R/plot.varpart234.R
vegan/R/points.cca.R
vegan/R/points.decorana.R
vegan/R/points.humpfit.R
vegan/R/points.metaMDS.R
vegan/R/points.ordiplot.R
vegan/R/points.orditkplot.R
vegan/R/points.procrustes.R
vegan/R/points.radline.R
vegan/R/poolaccum.R
vegan/R/postMDS.R
vegan/R/prc.R
vegan/R/predict.cca.R
vegan/R/predict.decorana.R
vegan/R/predict.fitspecaccum.R
vegan/R/predict.humpfit.R
vegan/R/predict.radline.R
vegan/R/predict.rda.R
vegan/R/predict.specaccum.R
vegan/R/pregraphKM.R
vegan/R/prepanel.ordi3d.R
vegan/R/prestondistr.R
vegan/R/prestonfit.R
vegan/R/print.CCorA.R
vegan/R/print.MOStest.R
vegan/R/print.adonis.R
vegan/R/print.anosim.R
vegan/R/print.betadisper.R
vegan/R/print.bioenv.R
vegan/R/print.capscale.R
vegan/R/print.cca.R
vegan/R/print.commsim.R
vegan/R/print.decorana.R
vegan/R/print.envfit.R
vegan/R/print.factorfit.R
vegan/R/print.fisherfit.R
vegan/R/print.humpfit.R
vegan/R/print.isomap.R
vegan/R/print.mantel.R
vegan/R/print.mantel.correlog.R
vegan/R/print.metaMDS.R
vegan/R/print.monoMDS.R
vegan/R/print.mrpp.R
vegan/R/print.mso.R
vegan/R/print.nestedchecker.R
vegan/R/print.nesteddisc.R
vegan/R/print.nestedn0.R
vegan/R/print.nestednodf.R
vegan/R/print.nestedtemp.R
vegan/R/print.nullmodel.R
vegan/R/print.oecosimu.R
vegan/R/print.permat.R
vegan/R/print.permutest.betadisper.R
vegan/R/print.permutest.cca.R
vegan/R/print.poolaccum.R
vegan/R/print.prestonfit.R
vegan/R/print.procrustes.R
vegan/R/print.protest.R
vegan/R/print.radfit.R
vegan/R/print.radfit.frame.R
vegan/R/print.radline.R
vegan/R/print.simmat.R
vegan/R/print.specaccum.R
vegan/R/print.summary.bioenv.R
vegan/R/print.summary.cca.R
vegan/R/print.summary.clamtest.R
vegan/R/print.summary.decorana.R
vegan/R/print.summary.humpfit.R
vegan/R/print.summary.isomap.R
vegan/R/print.summary.meandist.R
vegan/R/print.summary.permat.R
vegan/R/print.summary.prc.R
vegan/R/print.summary.procrustes.R
vegan/R/print.summary.taxondive.R
vegan/R/print.taxondive.R
vegan/R/print.varpart.R
vegan/R/print.varpart234.R
vegan/R/print.vectorfit.R
vegan/R/print.wcmdscale.R
vegan/R/procrustes.R
vegan/R/profile.MOStest.R
vegan/R/profile.humpfit.R
vegan/R/protest.R
vegan/R/rad.lognormal.R
vegan/R/rad.null.R
vegan/R/rad.preempt.R
vegan/R/rad.zipf.R
vegan/R/rad.zipfbrot.R
vegan/R/radfit.R
vegan/R/radfit.data.frame.R
vegan/R/radfit.default.R
vegan/R/radlattice.R
vegan/R/rankindex.R
vegan/R/rarecurve.R
vegan/R/rarefy.R
vegan/R/rareslope.R
vegan/R/raupcrick.R
vegan/R/rda.R
vegan/R/rda.default.R
vegan/R/rda.formula.R
vegan/R/read.cep.R
vegan/R/renyi.R
vegan/R/renyiaccum.R
vegan/R/residuals.cca.R
vegan/R/residuals.procrustes.R
vegan/R/rrarefy.R
vegan/R/scalingUtils.R
vegan/R/scores.R
vegan/R/scores.betadisper.R
vegan/R/scores.betadiver.R
vegan/R/scores.cca.R
vegan/R/scores.decorana.R
vegan/R/scores.default.R
vegan/R/scores.envfit.R
vegan/R/scores.lda.R
vegan/R/scores.metaMDS.R
vegan/R/scores.ordihull.R
vegan/R/scores.ordiplot.R
vegan/R/scores.orditkplot.R
vegan/R/scores.pcnm.R
vegan/R/scores.rda.R
vegan/R/screeplot.cca.R
vegan/R/screeplot.decorana.R
vegan/R/screeplot.prcomp.R
vegan/R/screeplot.princomp.R
vegan/R/showvarparts.R
vegan/R/simper.R
vegan/R/simpleRDA2.R
vegan/R/simulate.nullmodel.R
vegan/R/simulate.rda.R
vegan/R/spandepth.R
vegan/R/spantree.R
vegan/R/specaccum.R
vegan/R/specnumber.R
vegan/R/specpool.R
vegan/R/specpool2vect.R
vegan/R/specslope.R
vegan/R/spenvcor.R
vegan/R/stepacross.R
vegan/R/str.nullmodel.R
vegan/R/stressplot.R
vegan/R/stressplot.wcmdscale.R
vegan/R/summary.anosim.R
vegan/R/summary.bioenv.R
vegan/R/summary.cca.R
vegan/R/summary.clamtest.R
vegan/R/summary.decorana.R
vegan/R/summary.dispweight.R
vegan/R/summary.humpfit.R
vegan/R/summary.isomap.R
vegan/R/summary.meandist.R
vegan/R/summary.ordiellipse.R
vegan/R/summary.ordihull.R
vegan/R/summary.permat.R
vegan/R/summary.poolaccum.R
vegan/R/summary.prc.R
vegan/R/summary.procrustes.R
vegan/R/summary.radfit.frame.R
vegan/R/summary.specaccum.R
vegan/R/summary.taxondive.R
vegan/R/swan.R
vegan/R/tabasco.R
vegan/R/taxa2dist.R
vegan/R/taxondive.R
vegan/R/text.cca.R
vegan/R/text.decorana.R
vegan/R/text.metaMDS.R
vegan/R/text.ordiplot.R
vegan/R/text.orditkplot.R
vegan/R/tolerance.R
vegan/R/tolerance.cca.R
vegan/R/treedist.R
vegan/R/treedive.R
vegan/R/treeheight.R
vegan/R/tsallis.R
vegan/R/tsallisaccum.R
vegan/R/update.nullmodel.R
vegan/R/varpart.R
vegan/R/varpart2.R
vegan/R/varpart3.R
vegan/R/varpart4.R
vegan/R/vectorfit.R
vegan/R/vegan-defunct.R
vegan/R/vegan-deprecated.R
vegan/R/veganCovEllipse.R
vegan/R/veganMahatrans.R
vegan/R/vegandocs.R
vegan/R/vegdist.R
vegan/R/vegemite.R
vegan/R/veiledspec.R
vegan/R/vif.cca.R
vegan/R/wascores.R
vegan/R/wcmdscale.R
vegan/R/weights.cca.R
vegan/R/weights.decorana.R
vegan/R/weights.rda.R
vegan/R/wisconsin.R
vegan/R/zzz.R
vegan/build
vegan/build/vignette.rds
vegan/data
vegan/data/BCI.env.rda
vegan/data/BCI.rda
vegan/data/dune.env.rda
vegan/data/dune.phylodis.rda
vegan/data/dune.rda
vegan/data/dune.taxon.rda
vegan/data/mite.env.rda
vegan/data/mite.pcnm.rda
vegan/data/mite.rda
vegan/data/mite.xy.rda
vegan/data/pyrifos.rda
vegan/data/sipoo.rda
vegan/data/varechem.rda
vegan/data/varespec.rda
vegan/inst
vegan/inst/ChangeLog
vegan/inst/NEWS.Rd
vegan/inst/ONEWS
vegan/inst/doc
vegan/inst/doc/FAQ-vegan.Rmd
vegan/inst/doc/FAQ-vegan.html
vegan/inst/doc/decision-vegan.R
vegan/inst/doc/decision-vegan.Rnw
vegan/inst/doc/decision-vegan.pdf
vegan/inst/doc/diversity-vegan.R
vegan/inst/doc/diversity-vegan.Rnw
vegan/inst/doc/diversity-vegan.pdf
vegan/inst/doc/intro-vegan.R
vegan/inst/doc/intro-vegan.Rnw
vegan/inst/doc/intro-vegan.pdf
vegan/inst/doc/partitioning.R
vegan/inst/doc/partitioning.Rnw
vegan/inst/doc/partitioning.pdf
vegan/man
vegan/man/BCI.Rd
vegan/man/CCorA.Rd
vegan/man/MDSrotate.Rd
vegan/man/MOStest.Rd
vegan/man/RsquareAdj.Rd
vegan/man/SSarrhenius.Rd
vegan/man/add1.cca.Rd
vegan/man/adipart.Rd
vegan/man/adonis.Rd
vegan/man/anosim.Rd
vegan/man/anova.cca.Rd
vegan/man/as.mlm.Rd
vegan/man/beals.Rd
vegan/man/betadisper.Rd
vegan/man/betadiver.Rd
vegan/man/bgdispersal.Rd
vegan/man/bioenv.Rd
vegan/man/biplot.rda.Rd
vegan/man/capscale.Rd
vegan/man/cascadeKM.Rd
vegan/man/cca.Rd
vegan/man/cca.object.Rd
vegan/man/clamtest.Rd
vegan/man/commsim.Rd
vegan/man/contribdiv.Rd
vegan/man/decorana.Rd
vegan/man/decostand.Rd
vegan/man/designdist.Rd
vegan/man/deviance.cca.Rd
vegan/man/dispindmorisita.Rd
vegan/man/dispweight.Rd
vegan/man/distconnected.Rd
vegan/man/diversity.Rd
vegan/man/dune.Rd
vegan/man/dune.taxon.Rd
vegan/man/eigenvals.Rd
vegan/man/envfit.Rd
vegan/man/eventstar.Rd
vegan/man/fisherfit.Rd
vegan/man/goodness.cca.Rd
vegan/man/goodness.metaMDS.Rd
vegan/man/humpfit.Rd
vegan/man/indpower.Rd
vegan/man/isomap.Rd
vegan/man/kendall.global.Rd
vegan/man/linestack.Rd
vegan/man/make.cepnames.Rd
vegan/man/mantel.Rd
vegan/man/mantel.correlog.Rd
vegan/man/metaMDS.Rd
vegan/man/mite.Rd
vegan/man/model.matrix.cca.Rd
vegan/man/monoMDS.Rd
vegan/man/mrpp.Rd
vegan/man/mso.Rd
vegan/man/multipart.Rd
vegan/man/nestedtemp.Rd
vegan/man/nobs.adonis.Rd
vegan/man/nullmodel.Rd
vegan/man/oecosimu.Rd
vegan/man/ordiArrowTextXY.Rd
vegan/man/ordiarrows.Rd
vegan/man/ordihull.Rd
vegan/man/ordilabel.Rd
vegan/man/ordiplot.Rd
vegan/man/ordipointlabel.Rd
vegan/man/ordiresids.Rd
vegan/man/ordistep.Rd
vegan/man/ordisurf.Rd
vegan/man/orditkplot.Rd
vegan/man/orditorp.Rd
vegan/man/ordixyplot.Rd
vegan/man/pcnm.Rd
vegan/man/permatfull.Rd
vegan/man/permustats.Rd
vegan/man/permutations.Rd
vegan/man/permutest.betadisper.Rd
vegan/man/plot.cca.Rd
vegan/man/prc.Rd
vegan/man/predict.cca.Rd
vegan/man/procrustes.Rd
vegan/man/pyrifos.Rd
vegan/man/radfit.Rd
vegan/man/rankindex.Rd
vegan/man/rarefy.Rd
vegan/man/raupcrick.Rd
vegan/man/read.cep.Rd
vegan/man/renyi.Rd
vegan/man/reorder.hclust.Rd
vegan/man/scores.Rd
vegan/man/screeplot.cca.Rd
vegan/man/simper.Rd
vegan/man/simulate.rda.Rd
vegan/man/sipoo.Rd
vegan/man/spantree.Rd
vegan/man/specaccum.Rd
vegan/man/specpool.Rd
vegan/man/stepacross.Rd
vegan/man/stressplot.wcmdscale.Rd
vegan/man/taxondive.Rd
vegan/man/tolerance.Rd
vegan/man/treedive.Rd
vegan/man/tsallis.Rd
vegan/man/varechem.Rd
vegan/man/varpart.Rd
vegan/man/vegan-defunct.Rd
vegan/man/vegan-deprecated.Rd
vegan/man/vegan-internal.Rd
vegan/man/vegan-package.Rd
vegan/man/vegandocs.Rd
vegan/man/vegdist.Rd
vegan/man/vegemite.Rd
vegan/man/wascores.Rd
vegan/man/wcmdscale.Rd
vegan/src
vegan/src/cepin.f
vegan/src/data2hill.c
vegan/src/decorana.f
vegan/src/goffactor.c
vegan/src/monoMDS.f
vegan/src/nestedness.c
vegan/src/ordering.f
vegan/src/pnpoly.c
vegan/src/stepacross.c
vegan/src/vegdist.c
vegan/vignettes
vegan/vignettes/FAQ-vegan.Rmd
vegan/vignettes/decision-vegan.Rnw
vegan/vignettes/diversity-vegan.Rnw
vegan/vignettes/intro-vegan.Rnw
vegan/vignettes/partitioning.Rnw
vegan/vignettes/varpart23.pdf
vegan/vignettes/varpart4.pdf
vegan/vignettes/vegan.bib
vegan/vignettes/vegan.sty