API for vegsoup
Classes and Methods for Phytosociology

Global functions
$	Man page
$,Sites-method	Man page
$,Species-method	Man page
$,SpeciesTaxonomy-method	Man page
$,Taxonomy-method	Man page
$,Vegsoup,character-method	Man page
$,Vegsoup-method	Man page
$,character-method	Man page
$<-	Man page
$<-,Sites-method	Man page
$<-,Species-method	Man page
$<-,Vegsoup,character-method	Man page
$<-,Vegsoup-method	Man page
$<-,character,ANY-method	Man page
.remos	Source code
BraunBlanquetReduce	Man page
BraunBlanquetReduce,Vegsoup-method	Man page
Coverscale	Man page
Coverscale-class	Man page
Extract	Man page
FisherTest	Man page
FisherTest,VegsoupPartition-method	Man page
FisherTest,VegsoupPartitionFidelity-method	Man page
Indpower	Man page
Indpower,Vegsoup-method	Man page
Indval	Man page
Indval,VegsoupPartition-method	Man page
KML	Man page
KML,Vegsoup-method	Man page
KML,VegsoupPartition-method	Man page
Latex	Man page
Latex,VegsoupPartition-method	Man page
Latex,VegsoupPartitionFidelity-method	Man page
Multipatt,VegsoupPartition-method	Man page
Multipatt-methods	Man page
OptimStride	Man page
Phi	Man page
Phi,VegsoupPartition-method	Man page
SigFidelity	Man page
SigFidelity,VegsoupPartition-method	Man page
Sites-class	Man page
SpatialPointsVegsoup	Man page
SpatialPointsVegsoup,Vegsoup-method	Man page
SpatialPolygonsVegsoup	Man page
SpatialPolygonsVegsoup,Vegsoup-method	Man page
Species-class	Man page
SpeciesTaxonomy	Man page
SpeciesTaxonomy-class	Man page
Taxonomy-class	Man page
Vegsoup	Man page
Vegsoup-class	Man page
VegsoupOptimstride-class	Man page
VegsoupPartition	Man page
VegsoupPartition-class	Man page
VegsoupPartitionFidelity-class	Man page
[	Man page
[,Sites,ANY,ANY,missing-method	Man page
[,Species,ANY,ANY,missing-method	Man page
[,SpeciesTaxonomy,ANY,ANY,missing-method	Man page
[,Taxonomy,ANY,ANY,missing-method	Man page
[,Vegsoup,ANY,ANY,missing-method	Man page
[,Vegsoup-method	Man page
[,VegsoupPartition,ANY,ANY,missing-method	Man page
[,partition,ANY,ANY,missing-method	Man page
abbr	Man page
abbr,Species-method	Man page
abbr,Taxonomy-method	Man page
abbr,Vegsoup-method	Man page
abbr.layer	Man page
abbr.layer,Vegsoup-method	Man page
abbr<-	Man page
abbr<-,Vegsoup,Character-method	Man page
abbr<-,Vegsoup-method	Man page
abundant	Man page
abundant,Vegsoup-method	Man page
accuracy	Man page
accuracy,VegsoupPartition,VegsoupPartition-method	Man page
accuracy,VegsoupPartition-method	Man page
apriori	Man page
apriori,Vegsoup-method	Man page
as,Vegsoup-method	Man page
as.array	Man page
as.array,Vegsoup-method	Man page
as.character	Man page
as.character,Vegsoup-method	Man page
as.data.frame	Man page
as.data.frame,Sites-method	Man page
as.data.frame,Vegsoup-method	Man page
as.data.list	Man page
as.data.list,Vegsoup-method	Man page
as.dendrogram	Man page
as.dendrogram,VegsoupPartition-method	Man page
as.dist	Man page
as.dist,Vegsoup-method	Man page
as.hclust	Man page
as.hclust,VegsoupPartition-method	Man page
as.logical	Man page
as.logical,Vegsoup-method	Man page
as.matrix	Man page
as.matrix,Vegsoup-method	Man page
as.mefa.Vegsoup	Source code
as.numeric	Man page
as.numeric,Vegsoup-method	Man page
as.table	Man page
as.table,VegsoupPartition-method	Man page
as.vector	Man page
as.vector,Vegsoup,missing-method	Man page
as.vector,Vegsoup-method	Man page
average	Man page
average,VegsoupPartition-method	Man page
barmstein	Man page
bbox	Man page
bbox,Vegsoup-method	Man page
berchtesgaden	Man page
bind	Man page
bind,Sites-method	Man page
bind,Species-method	Man page
bind,SpeciesTaxonomy-method	Man page
bind,Taxonomy-method	Man page
bind,Vegsoup-method	Man page
bind,VegsoupPartition-method	Man page
castFooter	Man page
coenoflex	Man page
coerce	Man page
coerce,Sites,data.frame-method	Man page
coerce,Vegsoup,SpatialPoints-method	Man page
coerce,Vegsoup,SpatialPointsDataFrame-method	Man page
coerce,Vegsoup,array-method	Man page
coerce,Vegsoup,data.frame-method	Man page
coerce,Vegsoup,data.list-method	Man page
coerce,Vegsoup,dist-method	Man page
coerce,Vegsoup,dsparseMatrix-method	Man page
coerce,Vegsoup,list-method	Man page
coerce,Vegsoup,matrix-method	Man page
coerce,Vegsoup,mefa-method	Man page
coerce,Vegsoup,sparseMatrix-method	Man page
coerce,coenocline,Vegsoup-method	Man page
coerce,list,Coverscale-method	Man page
colMeans	Man page
colMeans,Vegsoup-method	Man page
colSums	Man page
colSums,Vegsoup-method	Man page
coldiss	Man page
coldiss,Vegsoup-method	Man page
colnames	Man page
colnames,Vegsoup-method	Man page
combine	Man page
compass	Man page
compress	Man page
compress,Vegsoup-method	Man page
compspec	Man page
compspec,Vegsoup-method	Man page
configure	Man page
confusion	Man page
confusion,VegsoupPartition,VegsoupPartition-method	Man page
confusion,VegsoupPartition-method	Man page
constancy	Man page
constancy,Vegsoup-method	Man page
constancy,VegsoupPartition-method	Man page
contingency	Man page
contingency,Vegsoup-method	Man page
contingency,VegsoupPartition-method	Man page
coordinates	Man page
coordinates,Sites-method	Man page
coordinates,Vegsoup-method	Man page
coordinates<-	Man page
coordinates<-,Vegsoup,ANY-method	Man page
coordinates<-,Vegsoup,CRS-method	Man page
coordinates<-,Vegsoup-method	Man page
coverscale	Man page
coverscale,Vegsoup-method	Man page
coverscale<-	Man page
coverscale<-,Vegsoup,Coverscale-method	Man page
coverscale<-,Vegsoup,character-method	Man page
coverscale<-,Vegsoup-method	Man page
decode	Man page
decostand	Man page
decostand,Vegsoup-method	Man page
decostand<-	Man page
decostand<-,Vegsoup,NULL-method	Man page
decostand<-,Vegsoup,character-method	Man page
decostand<-,Vegsoup-method	Man page
decostand<-,VegsoupPartition,NULL-method	Man page
decostand<-,VegsoupPartition,character-method	Man page
decostand<-,VegsoupPartition-method	Man page
decostand<-,VegsoupPartitionFidelity,NULL-method	Man page
dim	Man page
dim,Vegsoup-method	Man page
dimnames	Man page
dimnames,Species-method	Man page
dimnames,Vegsoup-method	Man page
disdiam	Man page
disdiam,VegsoupPartition-method	Man page
disdiam-methods	Man page
distconnected	Man page
distconnected,Vegsoup-method	Man page
elevation	Man page
elevation,Vegsoup-method	Man page
ellipsoidhull	Man page
ellipsoidhull,VegsoupPartition-method	Man page
extent	Man page
extent,Vegsoup-method	Man page
extract	Man page
extract,Raster,Vegsoup-method	Man page
extract,Vegsoup-method	Man page
fidelity	Man page
fidelity,VegsoupPartition-method	Man page
fill	Man page
fill,Vegsoup-method	Man page
getK	Man page
getK,VegsoupOptimstride-method	Man page
getK,VegsoupPartition-method	Man page
getStat	Man page
getStat,VegsoupPartitionFidelity-method	Man page
hcr	Man page
hcr,Vegsoup-method	Man page
hcr,VegsoupPartition-method	Man page
head	Man page
head,Vegsoup-method	Man page
head,VegsoupPartition-method	Man page
header	Man page
hist	Man page
hist,Vegsoup-method	Man page
hist,VegsoupPartition-method	Man page
hist,VegsoupPartitionFidelity-method	Man page
identical	Man page
identical,Sites,Species-method	Man page
identical,Species,Sites-method	Man page
identical,Species,Taxonomy-method	Man page
identical,SpeciesTaxonomy,Sites-method	Man page
indices	Man page
indices,Vegsoup-method	Man page
instantsoup	Man page
intersect	Man page
intersect,Sites,Species-method	Man page
intersect,Species,Sites-method	Man page
intersect,Species,Taxonomy-method	Man page
intersect,SpeciesTaxonomy,Sites-method	Man page
is.continuous	Man page
is.continuous,Coverscale-method	Man page
is.continuous,Vegsoup-method	Man page
is.occurence	Man page
is.occurence,Coverscale-method	Man page
is.occurence,Vegsoup-method	Man page
is.ordinal	Man page
is.ordinal,Coverscale-method	Man page
is.ordinal,Vegsoup-method	Man page
isamic	Man page
isamic,VegsoupPartition-method	Man page
isamic-methods	Man page
isolate	Man page
isolate,VegsoupPartition-method	Man page
latlng2tile	Man page Source code
layer	Man page
layer,Vegsoup-method	Man page
layernumber	Man page
layernumber,Vegsoup-method	Man page
layers	Man page
layers,Vegsoup-method	Man page
layers<-	Man page
layers<-,Vegsoup,character-method	Man page
layers<-,Vegsoup-method	Man page
method	Man page
method,VegsoupOptimstride-method	Man page
murdoch	Man page
murdoch,VegsoupPartition-method	Man page
murdoch-methods	Man page
names	Man page
names,Vegsoup-method	Man page
names<-	Man page
names<-,Vegsoup,character-method	Man page
names<-,Vegsoup-method	Man page
ncell	Man page
ncell,Vegsoup-method	Man page
ncol	Man page Man page
ncol,Vegsoup-method	Man page
nndist	Man page
nndist,Vegsoup-method	Man page
nrow	Man page
nrow,Sites-method	Man page
nrow,Species-method	Man page
nrow,Taxonomy-method	Man page
nrow,Vegsoup-method	Man page Man page
optimclass1	Man page
optimclass1,VegsoupOptimstride-method	Man page
optimclass2	Man page
optimclass2,VegsoupOptimstride-method	Man page
optindval	Man page
optindval,VegsoupPartition-method	Man page
optindval-methods	Man page
optsil	Man page
optsil,VegsoupPartition-method	Man page
optsil-methods	Man page
outlier	Man page
outlier,Vegsoup-method	Man page
over	Man page
over,Vegsoup,SpatialPolygonsDataFrame-method	Man page
over,Vegsoup-method	Man page
partana	Man page
partana,VegsoupPartition-method	Man page
partana-methods	Man page
partition	Man page
partition,VegsoupPartition-method	Man page
partitioning	Man page
partitioning,VegsoupPartition-method	Man page
partitioningCombinations	Man page
partitioningCombinations,VegsoupPartition-method	Man page
partitioningMatrix	Man page
partitioningMatrix,VegsoupPartition-method	Man page
partitions	Man page
partitions,VegsoupPartition-method	Man page
peaks	Man page
peaks,VegsoupOptimstride-method	Man page
plainsoup	Man page
plot,Vegsoup,missing-method	Man page
plot,VegsoupOptimstride,missing-method	Man page
plot,VegsoupPartition,missing-method	Man page
plot-methods	Man page
plotPCO	Man page
preamble	Man page
private	Man page
private,VegsoupPartition-method	Man page
private-methods	Man page
proj4string	Man page
proj4string,Vegsoup-method	Man page
proj4string<-	Man page
proj4string<-,Vegsoup,CRS-method	Man page
proj4string<-,Vegsoup-method	Man page
quantile	Man page
quantile,Vegsoup-method	Man page
quantile,VegsoupPartition-method	Man page
quicklook	Man page
quicklook,Vegsoup-method	Man page
read.XML	Man page
read.verbatim	Man page
read.verbatim.append	Man page
rectangles	Man page
rectangles,VegsoupPartition-method	Man page
relevee	Man page
relevee,Vegsoup-method	Man page
relevee-methods	Man page
remos	Man page
remos,VegsoupPartition-method	Man page
remos-methods	Man page
reorder	Man page
reorder,VegsoupPartition-method	Man page
reshapeSpecies	Man page
reverseGeocode	Man page
reverseGeocode,SpatialPointsDataFrame-method	Man page
reverseGeocode,Vegsoup-method	Man page
richness	Man page
richness,Species-method	Man page
richness,Vegsoup-method	Man page
richness,VegsoupPartition-method	Man page
row.names	Man page
row.names,Vegsoup-method	Man page
row.names<-	Man page
row.names<-,Vegsoup,character-method	Man page
row.names<-,Vegsoup,integer-method	Man page
row.names<-,Vegsoup-method	Man page
rowMeans	Man page
rowMeans,Vegsoup-method	Man page
rowSums	Man page Man page
rowSums,Vegsoup-method	Man page Man page
rownames	Man page
rownames,Vegsoup,missing,missing-method	Man page
rownames,Vegsoup-method	Man page
rownames<-	Man page
rownames<-,Vegsoup,character-method	Man page
rownames<-,Vegsoup,integer-method	Man page
rownames<-,Vegsoup,missing,missing-method	Man page
rownames<-,Vegsoup-method	Man page
sample	Man page
sample,Vegsoup-method	Man page
seriation	Man page
seriation,Vegsoup-method	Man page
seriation,VegsoupPartition-method	Man page
shapeSpecies	Man page
shared	Man page
shared,VegsoupPartition-method	Man page
silhouette	Man page
silhouette,VegsoupPartition-method	Man page
singleton	Man page
singletons	Man page
sites	Man page
sites,Sites-method	Man page Man page
sites,Vegsoup-method	Man page
sites,VegsoupVerbatim-method	Man page
sites,bind-method	Man page
sites,character-method	Man page
sites,data.frame-method	Man page
sites,matrix-method	Man page
sites-method	Man page
sites<-	Man page
sites<-,Vegsoup,data.frame-method	Man page
sites<-,Vegsoup-method	Man page
spTransform	Man page
spTransform,Vegsoup-method	Man page
species	Man page
species,Species-method	Man page Man page
species,SpeciesTaxonomy-method	Man page
species,Vegsoup-method	Man page
species,VegsoupVerbatim-method	Man page
species,character-method	Man page
species,data.frame-method	Man page
species,matrix-method	Man page
species<-	Man page
species<-,Species,data.frame-method	Man page
species<-,SpeciesTaxonomy,Species-method	Man page
species<-,SpeciesTaxonomy,data.frame-method	Man page
species<-,Vegsoup,Species-method	Man page
species<-,Vegsoup,SpeciesTaxonomy-method	Man page
species<-,Vegsoup,data.frame-method	Man page
species<-,Vegsoup-method	Man page
splitAbbr	Man page
splitAbbr,Vegsoup-method	Man page
spread	Man page
spread,VegsoupPartition-method	Man page
spread-methods	Man page
stable	Man page
stable,VegsoupPartition-method	Man page
stack	Man page
stackCoordinates	Man page
stackSites	Man page
stackSpecies	Man page
str2latlng	Man page
stride	Man page
stride,VegsoupOptimstride-method	Man page
subset	Man page
subset,Vegsoup-method	Man page
summary	Man page
summary,Vegsoup-method	Man page
summary,VegsoupOptimstride-method	Man page
summary,VegsoupOptimstride-methods	Man page
summary,VegsoupPartition-method	Man page
summary,VegsoupPartitionFidelity-method	Man page
summary-methods	Man page
tabdev	Man page
tabdev,VegsoupPartition-method	Man page
tabdev-methods	Man page
tail	Man page
tail,Vegsoup-method	Man page
taxalist	Man page
taxalist,Vegsoup-method	Man page
taxalist-methods	Man page
taxon	Man page
taxon,Vegsoup-method	Man page
taxonomy	Man page Man page
taxonomy,SpeciesTaxonomy-method	Man page
taxonomy,Taxonomy-method	Man page
taxonomy,Vegsoup-method	Man page
taxonomy,character-method	Man page
taxonomy,data.frame-method	Man page
taxonomy,matrix-method	Man page
taxonomy<-	Man page
taxonomy<-,SpeciesTaxonomy,Species-method	Man page
taxonomy<-,SpeciesTaxonomy,Taxonomy-method	Man page
taxonomy<-,SpeciesTaxonomy,data.frame-method	Man page
taxonomy<-,Vegsoup,SpeciesTaxonomy-method	Man page
template	Man page Source code
threshold	Man page
threshold,VegsoupOptimstride-method	Man page
tile2latlng	Man page
typical	Man page
typical,VegsoupPartition-method	Man page
variable	Man page
variable,Sites-method	Man page
variable<-	Man page
variable<-,Sites,character,ANY-method	Man page
variable<-,Sites,character-method	Man page
variables	Man page
variables,Sites-method	Man page
vegdist	Man page
vegdist,Vegsoup-method	Man page
vegdist<-	Man page
vegdist<-,Vegsoup,character-method	Man page
vegdist<-,Vegsoup-method	Man page
vegdist<-,VegsoupPartition,character-method	Man page
vegdist<-,VegsoupPartition-method	Man page
vegsoup	Man page
vegsoup-package	Man page
verbatim	Man page
whatshere2lnglat	Man page
which.max	Man page
which.max,VegsoupOptimstride-method	Man page
windsfeld	Man page
write.verbatim	Man page
write.verbatim,Vegsoup-method	Man page
write.verbatim,VegsoupPartition-method	Man page